Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.143.1 and Xcc-8004.144.1 are separated by 12 nucleotides Xcc-8004.144.1 and Xcc-8004.145.1 are separated by 78 nucleotides Xcc-8004.145.1 and Xcc-8004.146.1 overlap by 4 nucleotides Xcc-8004.146.1 and Xcc-8004.148.1 are separated by 273 nucleotides
Xcc-8004.143.1: Xcc-8004.143.1 - hypothetical protein, at 132,161 to 132,337
Xcc-8004.143.1
Xcc-8004.144.1: Xcc-8004.144.1 - Putative protein-S-isoprenylcysteine methyltransferase, at 132,350 to 132,994
Xcc-8004.144.1
Xcc-8004.145.1: Xcc-8004.145.1 - two-component system sensor protein, at 133,073 to 134,302
Xcc-8004.145.1
Xcc-8004.146.1: Xcc-8004.146.1 - Two-component system regulatory protein, at 134,299 to 134,931
Xcc-8004.146.1
Xcc-8004.148.1: Xcc-8004.148.1 - hypothetical protein, at 135,205 to 136,578
Xcc-8004.148.1
Position (kb) 133
134
135 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 132.101 kb on + strand at 132.101 kb on + strand at 132.101 kb on + strand at 132.101 kb on + strand at 132.101 kb on + strand at 132.102 kb on - strand at 132.102 kb on - strand at 132.102 kb on - strand at 132.102 kb on - strand at 132.154 kb on + strand at 132.154 kb on + strand at 132.155 kb on - strand at 132.155 kb on - strand at 132.155 kb on - strand at 132.155 kb on - strand at 132.225 kb on - strand, within Xcc-8004.143.1 at 132.225 kb on - strand, within Xcc-8004.143.1 at 132.256 kb on + strand, within Xcc-8004.143.1 at 132.256 kb on + strand, within Xcc-8004.143.1 at 132.256 kb on + strand, within Xcc-8004.143.1 at 132.256 kb on + strand, within Xcc-8004.143.1 at 132.257 kb on - strand, within Xcc-8004.143.1 at 132.257 kb on - strand, within Xcc-8004.143.1 at 132.314 kb on - strand, within Xcc-8004.143.1 at 132.390 kb on + strand at 132.391 kb on - strand at 132.391 kb on - strand at 132.400 kb on - strand at 132.526 kb on - strand, within Xcc-8004.144.1 at 132.549 kb on + strand, within Xcc-8004.144.1 at 132.550 kb on - strand, within Xcc-8004.144.1 at 132.867 kb on + strand, within Xcc-8004.144.1 at 132.867 kb on + strand, within Xcc-8004.144.1 at 132.868 kb on - strand, within Xcc-8004.144.1 at 133.533 kb on + strand, within Xcc-8004.145.1 at 133.533 kb on + strand, within Xcc-8004.145.1 at 133.534 kb on - strand, within Xcc-8004.145.1 at 133.550 kb on + strand, within Xcc-8004.145.1 at 133.550 kb on + strand, within Xcc-8004.145.1 at 133.550 kb on + strand, within Xcc-8004.145.1 at 133.550 kb on + strand, within Xcc-8004.145.1 at 133.550 kb on + strand, within Xcc-8004.145.1 at 133.551 kb on - strand, within Xcc-8004.145.1 at 133.551 kb on - strand, within Xcc-8004.145.1 at 133.551 kb on - strand, within Xcc-8004.145.1 at 133.551 kb on - strand, within Xcc-8004.145.1 at 133.551 kb on - strand, within Xcc-8004.145.1 at 133.551 kb on - strand, within Xcc-8004.145.1 at 133.604 kb on + strand, within Xcc-8004.145.1 at 133.604 kb on + strand, within Xcc-8004.145.1 at 133.604 kb on + strand, within Xcc-8004.145.1 at 133.604 kb on + strand, within Xcc-8004.145.1 at 133.604 kb on + strand, within Xcc-8004.145.1 at 133.605 kb on - strand, within Xcc-8004.145.1 at 133.605 kb on - strand, within Xcc-8004.145.1 at 133.605 kb on - strand, within Xcc-8004.145.1 at 133.605 kb on - strand, within Xcc-8004.145.1 at 133.605 kb on - strand, within Xcc-8004.145.1 at 133.605 kb on - strand, within Xcc-8004.145.1 at 133.605 kb on - strand, within Xcc-8004.145.1 at 133.643 kb on + strand, within Xcc-8004.145.1 at 133.643 kb on + strand, within Xcc-8004.145.1 at 133.643 kb on + strand, within Xcc-8004.145.1 at 133.643 kb on + strand, within Xcc-8004.145.1 at 133.643 kb on + strand, within Xcc-8004.145.1 at 133.643 kb on + strand, within Xcc-8004.145.1 at 133.643 kb on + strand, within Xcc-8004.145.1 at 133.643 kb on + strand, within Xcc-8004.145.1 at 133.643 kb on + strand, within Xcc-8004.145.1 at 133.643 kb on + strand, within Xcc-8004.145.1 at 133.644 kb on - strand, within Xcc-8004.145.1 at 133.644 kb on - strand, within Xcc-8004.145.1 at 133.644 kb on - strand, within Xcc-8004.145.1 at 133.683 kb on - strand, within Xcc-8004.145.1 at 133.683 kb on - strand, within Xcc-8004.145.1 at 133.683 kb on - strand, within Xcc-8004.145.1 at 133.683 kb on - strand, within Xcc-8004.145.1 at 133.683 kb on - strand, within Xcc-8004.145.1 at 133.944 kb on + strand, within Xcc-8004.145.1 at 133.945 kb on - strand, within Xcc-8004.145.1 at 133.945 kb on - strand, within Xcc-8004.145.1 at 133.945 kb on - strand, within Xcc-8004.145.1 at 133.945 kb on - strand, within Xcc-8004.145.1 at 133.945 kb on - strand, within Xcc-8004.145.1 at 133.945 kb on - strand, within Xcc-8004.145.1 at 133.945 kb on - strand, within Xcc-8004.145.1 at 133.945 kb on - strand, within Xcc-8004.145.1 at 134.526 kb on + strand, within Xcc-8004.146.1 at 134.711 kb on - strand, within Xcc-8004.146.1 at 134.792 kb on - strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.913 kb on + strand at 134.913 kb on + strand at 134.913 kb on + strand at 134.913 kb on + strand at 134.913 kb on + strand at 134.913 kb on + strand at 134.914 kb on - strand at 134.914 kb on - strand at 134.914 kb on - strand at 134.914 kb on - strand at 134.914 kb on - strand at 134.914 kb on - strand at 134.914 kb on - strand at 134.976 kb on - strand at 134.976 kb on - strand at 134.976 kb on - strand at 134.976 kb on - strand at 134.976 kb on - strand at 134.976 kb on - strand at 134.976 kb on - strand at 134.976 kb on - strand at 134.976 kb on - strand at 134.976 kb on - strand at 134.978 kb on - strand at 134.978 kb on - strand at 134.978 kb on - strand at 134.978 kb on - strand at 134.978 kb on - strand at 134.978 kb on - strand at 134.978 kb on - strand at 134.978 kb on - strand at 134.978 kb on - strand at 134.978 kb on - strand at 134.978 kb on - strand at 134.978 kb on - strand at 134.998 kb on - strand at 134.998 kb on - strand at 135.102 kb on + strand at 135.102 kb on + strand at 135.102 kb on + strand at 135.111 kb on + strand at 135.111 kb on + strand at 135.111 kb on + strand at 135.111 kb on + strand at 135.111 kb on + strand at 135.111 kb on + strand at 135.111 kb on + strand at 135.120 kb on + strand at 135.120 kb on + strand at 135.156 kb on - strand at 135.206 kb on + strand at 135.207 kb on - strand at 135.207 kb on - strand at 135.207 kb on - strand at 135.258 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 132,101 + -2.1 132,101 + +0.3 132,101 + -0.3 132,101 + +1.4 132,101 + -1.9 132,102 - -0.1 132,102 - +0.0 132,102 - -0.7 132,102 - -2.3 132,154 + +0.4 132,154 + -0.5 132,155 - -1.5 132,155 - -1.1 132,155 - +0.1 132,155 - +0.0 132,225 - Xcc-8004.143.1 0.36 +0.6 132,225 - Xcc-8004.143.1 0.36 -0.3 132,256 + Xcc-8004.143.1 0.54 -0.4 132,256 + Xcc-8004.143.1 0.54 -0.3 132,256 + Xcc-8004.143.1 0.54 +0.7 132,256 + Xcc-8004.143.1 0.54 -0.5 132,257 - Xcc-8004.143.1 0.54 -0.1 132,257 - Xcc-8004.143.1 0.54 +1.5 132,314 - Xcc-8004.143.1 0.86 +0.4 132,390 + +0.9 132,391 - -0.1 132,391 - -0.5 132,400 - +0.4 132,526 - Xcc-8004.144.1 0.27 -0.7 132,549 + Xcc-8004.144.1 0.31 +0.4 132,550 - Xcc-8004.144.1 0.31 -0.7 132,867 + Xcc-8004.144.1 0.80 +0.6 132,867 + Xcc-8004.144.1 0.80 +0.9 132,868 - Xcc-8004.144.1 0.80 -0.2 133,533 + Xcc-8004.145.1 0.37 +0.5 133,533 + Xcc-8004.145.1 0.37 +0.3 133,534 - Xcc-8004.145.1 0.37 +2.1 133,550 + Xcc-8004.145.1 0.39 +0.7 133,550 + Xcc-8004.145.1 0.39 -0.2 133,550 + Xcc-8004.145.1 0.39 -0.8 133,550 + Xcc-8004.145.1 0.39 +0.3 133,550 + Xcc-8004.145.1 0.39 -0.5 133,551 - Xcc-8004.145.1 0.39 -0.5 133,551 - Xcc-8004.145.1 0.39 -0.0 133,551 - Xcc-8004.145.1 0.39 +0.5 133,551 - Xcc-8004.145.1 0.39 -0.1 133,551 - Xcc-8004.145.1 0.39 +1.2 133,551 - Xcc-8004.145.1 0.39 +0.6 133,604 + Xcc-8004.145.1 0.43 -0.2 133,604 + Xcc-8004.145.1 0.43 +0.7 133,604 + Xcc-8004.145.1 0.43 -0.5 133,604 + Xcc-8004.145.1 0.43 +0.4 133,604 + Xcc-8004.145.1 0.43 +0.1 133,605 - Xcc-8004.145.1 0.43 +1.4 133,605 - Xcc-8004.145.1 0.43 +1.0 133,605 - Xcc-8004.145.1 0.43 +0.8 133,605 - Xcc-8004.145.1 0.43 -0.7 133,605 - Xcc-8004.145.1 0.43 +0.1 133,605 - Xcc-8004.145.1 0.43 -0.2 133,605 - Xcc-8004.145.1 0.43 -0.9 133,643 + Xcc-8004.145.1 0.46 -0.5 133,643 + Xcc-8004.145.1 0.46 -0.2 133,643 + Xcc-8004.145.1 0.46 -0.0 133,643 + Xcc-8004.145.1 0.46 +1.0 133,643 + Xcc-8004.145.1 0.46 -0.2 133,643 + Xcc-8004.145.1 0.46 +0.3 133,643 + Xcc-8004.145.1 0.46 +0.1 133,643 + Xcc-8004.145.1 0.46 -2.0 133,643 + Xcc-8004.145.1 0.46 +0.7 133,643 + Xcc-8004.145.1 0.46 -1.8 133,644 - Xcc-8004.145.1 0.46 +0.6 133,644 - Xcc-8004.145.1 0.46 -1.4 133,644 - Xcc-8004.145.1 0.46 +0.9 133,683 - Xcc-8004.145.1 0.50 -0.2 133,683 - Xcc-8004.145.1 0.50 +0.5 133,683 - Xcc-8004.145.1 0.50 -0.0 133,683 - Xcc-8004.145.1 0.50 +1.1 133,683 - Xcc-8004.145.1 0.50 +0.0 133,944 + Xcc-8004.145.1 0.71 +0.3 133,945 - Xcc-8004.145.1 0.71 -0.0 133,945 - Xcc-8004.145.1 0.71 +0.3 133,945 - Xcc-8004.145.1 0.71 +0.2 133,945 - Xcc-8004.145.1 0.71 -0.3 133,945 - Xcc-8004.145.1 0.71 -0.3 133,945 - Xcc-8004.145.1 0.71 +1.0 133,945 - Xcc-8004.145.1 0.71 +0.7 133,945 - Xcc-8004.145.1 0.71 +0.1 134,526 + Xcc-8004.146.1 0.36 +0.7 134,711 - Xcc-8004.146.1 0.65 +0.3 134,792 - Xcc-8004.146.1 0.78 +1.1 134,848 + Xcc-8004.146.1 0.87 -1.7 134,848 + Xcc-8004.146.1 0.87 -2.2 134,848 + Xcc-8004.146.1 0.87 +0.6 134,848 + Xcc-8004.146.1 0.87 +0.8 134,848 + Xcc-8004.146.1 0.87 +0.6 134,848 + Xcc-8004.146.1 0.87 +0.3 134,848 + Xcc-8004.146.1 0.87 +1.7 134,848 + Xcc-8004.146.1 0.87 -0.3 134,848 + Xcc-8004.146.1 0.87 -0.1 134,848 + Xcc-8004.146.1 0.87 -0.9 134,848 + Xcc-8004.146.1 0.87 +2.0 134,848 + Xcc-8004.146.1 0.87 +0.9 134,848 + Xcc-8004.146.1 0.87 +0.2 134,848 + Xcc-8004.146.1 0.87 +0.2 134,848 + Xcc-8004.146.1 0.87 +0.5 134,848 + Xcc-8004.146.1 0.87 -0.9 134,848 + Xcc-8004.146.1 0.87 +1.0 134,848 + Xcc-8004.146.1 0.87 +0.9 134,848 + Xcc-8004.146.1 0.87 +0.7 134,848 + Xcc-8004.146.1 0.87 +0.5 134,848 + Xcc-8004.146.1 0.87 +0.1 134,849 - Xcc-8004.146.1 0.87 +0.1 134,849 - Xcc-8004.146.1 0.87 -0.2 134,849 - Xcc-8004.146.1 0.87 +0.6 134,849 - Xcc-8004.146.1 0.87 -1.0 134,849 - Xcc-8004.146.1 0.87 -0.0 134,849 - Xcc-8004.146.1 0.87 -0.9 134,849 - Xcc-8004.146.1 0.87 -0.1 134,849 - Xcc-8004.146.1 0.87 +0.9 134,849 - Xcc-8004.146.1 0.87 +0.6 134,849 - Xcc-8004.146.1 0.87 +0.3 134,849 - Xcc-8004.146.1 0.87 +0.4 134,849 - Xcc-8004.146.1 0.87 +0.6 134,849 - Xcc-8004.146.1 0.87 -0.1 134,849 - Xcc-8004.146.1 0.87 -0.1 134,849 - Xcc-8004.146.1 0.87 -0.9 134,849 - Xcc-8004.146.1 0.87 -0.3 134,849 - Xcc-8004.146.1 0.87 +1.2 134,849 - Xcc-8004.146.1 0.87 +1.3 134,849 - Xcc-8004.146.1 0.87 -2.8 134,849 - Xcc-8004.146.1 0.87 +0.1 134,849 - Xcc-8004.146.1 0.87 +0.3 134,849 - Xcc-8004.146.1 0.87 -0.3 134,849 - Xcc-8004.146.1 0.87 +0.6 134,849 - Xcc-8004.146.1 0.87 -0.4 134,849 - Xcc-8004.146.1 0.87 -1.2 134,849 - Xcc-8004.146.1 0.87 -1.3 134,849 - Xcc-8004.146.1 0.87 +0.7 134,849 - Xcc-8004.146.1 0.87 -0.9 134,849 - Xcc-8004.146.1 0.87 -0.4 134,849 - Xcc-8004.146.1 0.87 +1.0 134,849 - Xcc-8004.146.1 0.87 +0.2 134,849 - Xcc-8004.146.1 0.87 -2.3 134,849 - Xcc-8004.146.1 0.87 +1.5 134,849 - Xcc-8004.146.1 0.87 -0.2 134,849 - Xcc-8004.146.1 0.87 -1.1 134,913 + -1.7 134,913 + +1.0 134,913 + +0.4 134,913 + +0.1 134,913 + +0.4 134,913 + +0.2 134,914 - +1.6 134,914 - +0.5 134,914 - -0.0 134,914 - -0.6 134,914 - +0.7 134,914 - -0.7 134,914 - +1.6 134,976 - -0.3 134,976 - +0.2 134,976 - -1.1 134,976 - -1.9 134,976 - -1.0 134,976 - -0.4 134,976 - -1.1 134,976 - +0.4 134,976 - +0.5 134,976 - -1.0 134,978 - -0.2 134,978 - -0.8 134,978 - +1.1 134,978 - -0.0 134,978 - -0.3 134,978 - -0.3 134,978 - +0.9 134,978 - -0.0 134,978 - -0.4 134,978 - +0.6 134,978 - +1.0 134,978 - +0.9 134,998 - +0.1 134,998 - -0.5 135,102 + +1.1 135,102 + -0.1 135,102 + -0.5 135,111 + -0.9 135,111 + +0.6 135,111 + -0.5 135,111 + -0.5 135,111 + -1.1 135,111 + -1.0 135,111 + -1.4 135,120 + -0.5 135,120 + -0.5 135,156 - -1.0 135,206 + -0.2 135,207 - +0.0 135,207 - +1.1 135,207 - -0.5 135,258 - +0.5
Or see this region's nucleotide sequence