Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1380.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
1,309,275	+				-0.7
1,309,275	+				-0.3
1,309,275	+				+0.2
1,309,276	-				+0.5
1,309,279	+				+0.2
1,309,279	+				-0.6
1,309,279	+				-0.7
1,309,280	-				+0.5
1,309,280	-				+0.1
1,309,280	-				+0.2
1,309,280	-				-1.7
1,309,280	-				+0.1
1,309,280	-				+0.8
1,309,486	+				-1.0
1,309,540	+		Xcc-8004.1379.1	0.11	+0.2
1,309,541	-		Xcc-8004.1379.1	0.11	+0.3
1,309,595	+		Xcc-8004.1379.1	0.19	-0.4
1,309,595	+		Xcc-8004.1379.1	0.19	+0.6
1,309,595	+		Xcc-8004.1379.1	0.19	-1.4
1,309,595	+		Xcc-8004.1379.1	0.19	-0.1
1,309,598	+		Xcc-8004.1379.1	0.19	-1.0
1,309,636	+		Xcc-8004.1379.1	0.24	-0.3
1,309,636	+		Xcc-8004.1379.1	0.24	-0.4
1,309,636	+		Xcc-8004.1379.1	0.24	+0.8
1,309,637	-		Xcc-8004.1379.1	0.24	-1.2
1,309,637	-		Xcc-8004.1379.1	0.24	-0.4
1,309,637	-		Xcc-8004.1379.1	0.24	-0.3
1,309,637	-		Xcc-8004.1379.1	0.24	-0.7
1,309,637	-		Xcc-8004.1379.1	0.24	-1.0
1,309,637	-		Xcc-8004.1379.1	0.24	+0.7
1,309,637	-		Xcc-8004.1379.1	0.24	-0.6
1,309,668	+		Xcc-8004.1379.1	0.29	-1.3
1,309,668	+		Xcc-8004.1379.1	0.29	-0.8
1,309,668	+		Xcc-8004.1379.1	0.29	-0.6
1,309,668	+		Xcc-8004.1379.1	0.29	-0.1
1,309,669	-		Xcc-8004.1379.1	0.29	+0.8
1,309,678	+		Xcc-8004.1379.1	0.30	+0.9
1,309,678	+		Xcc-8004.1379.1	0.30	-0.7
1,309,679	-		Xcc-8004.1379.1	0.30	+0.4
1,309,679	-		Xcc-8004.1379.1	0.30	+1.1
1,309,679	-		Xcc-8004.1379.1	0.30	+0.3
1,309,679	-		Xcc-8004.1379.1	0.30	+0.4
1,309,679	-		Xcc-8004.1379.1	0.30	+0.2
1,309,679	-		Xcc-8004.1379.1	0.30	+0.2
1,309,679	-		Xcc-8004.1379.1	0.30	-0.1
1,309,736	-		Xcc-8004.1379.1	0.38	-0.6
1,309,810	+		Xcc-8004.1379.1	0.49	-1.7
1,309,811	-		Xcc-8004.1379.1	0.49	-1.0
1,309,811	-		Xcc-8004.1379.1	0.49	-0.8
1,309,813	+		Xcc-8004.1379.1	0.49	+0.8
1,309,813	+		Xcc-8004.1379.1	0.49	+0.5
1,309,814	-		Xcc-8004.1379.1	0.49	-0.2
1,309,814	-		Xcc-8004.1379.1	0.49	+0.8
1,310,086	+		Xcc-8004.1379.1	0.88	-0.8
1,310,087	-		Xcc-8004.1379.1	0.88	+0.1
1,310,152	+				+1.2
1,310,152	+				-0.0
1,310,153	-				-0.4
1,310,153	-				+0.2
1,310,153	-				-1.7
1,310,155	+				+0.9
1,310,155	+				-1.6
1,310,155	+				-0.7
1,310,155	+				+2.2
1,310,156	-				+1.2
1,310,156	-				-0.4
1,310,156	-				+0.3
1,310,202	-				-0.2
1,310,468	+		Xcc-8004.1380.1	0.82	-0.3
1,310,468	+		Xcc-8004.1380.1	0.82	-0.1
1,310,468	+		Xcc-8004.1380.1	0.82	-1.1
1,310,495	+				+0.3
1,310,495	+				+0.9
1,310,495	+				+1.1
1,310,495	+				-0.4
1,310,495	+				-1.8
1,310,496	-				-0.3
1,310,496	-				-1.7
1,310,496	-				-0.2
1,310,616	-				+0.5
1,310,634	+				+1.5
1,310,634	+				+0.5