Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1361.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
1,285,712	+		Xcc-8004.1360.1	0.52	+2.8
1,285,713	-		Xcc-8004.1360.1	0.52	-0.1
1,285,786	+		Xcc-8004.1360.1	0.59	+0.4
1,285,786	+		Xcc-8004.1360.1	0.59	+0.8
1,285,786	+		Xcc-8004.1360.1	0.59	+1.2
1,285,786	+		Xcc-8004.1360.1	0.59	-0.1
1,285,786	+		Xcc-8004.1360.1	0.59	-1.2
1,285,787	-		Xcc-8004.1360.1	0.59	-0.4
1,285,787	-		Xcc-8004.1360.1	0.59	+0.5
1,285,787	-		Xcc-8004.1360.1	0.59	-1.1
1,285,787	-		Xcc-8004.1360.1	0.59	+0.6
1,285,879	+		Xcc-8004.1360.1	0.68	-0.6
1,285,880	-		Xcc-8004.1360.1	0.69	-1.0
1,285,948	+		Xcc-8004.1360.1	0.75	+0.1
1,285,948	+		Xcc-8004.1360.1	0.75	-0.3
1,285,949	-		Xcc-8004.1360.1	0.76	+0.3
1,285,987	+		Xcc-8004.1360.1	0.79	+0.2
1,286,014	+		Xcc-8004.1360.1	0.82	+0.9
1,286,015	-		Xcc-8004.1360.1	0.82	-0.6
1,286,074	+		Xcc-8004.1360.1	0.88	-0.4
1,286,108	-				+0.2
1,286,189	+				-0.1
1,286,189	+				+0.4
1,286,189	+				+0.5
1,286,189	+				+0.0
1,286,189	+				-0.9
1,286,189	+				+0.7
1,286,189	+				+1.4
1,286,189	+				-0.4
1,286,189	+				+1.5
1,286,189	+				-2.8
1,286,190	-				+0.6
1,286,190	-				-0.3
1,286,190	-				+0.2
1,286,190	-				+1.1
1,286,190	-				+0.3
1,286,190	-				+0.4
1,286,190	-				-0.3
1,286,190	-				-1.7
1,286,190	-				+0.0
1,286,190	-				+0.5
1,286,232	+				+0.1
1,286,232	+				-0.9
1,286,232	+				-0.1
1,286,233	-				+0.3
1,286,233	-				+0.8
1,286,233	-				-1.3
1,286,233	-				+1.5
1,286,233	-				+1.1
1,286,233	-				-0.2
1,286,233	-				-0.2
1,286,243	+				+0.5
1,286,243	+				+0.0
1,286,243	+				+1.3
1,286,243	+				-0.0
1,286,243	+				+0.6
1,286,244	-				+0.5
1,286,244	-				-1.0
1,286,244	-				+0.6
1,286,244	-				-0.1
1,286,245	+				+0.0
1,286,245	+				-0.6
1,286,245	+				+0.7
1,286,245	+				+0.7
1,286,245	+				-0.6
1,286,245	+				-0.2
1,286,245	+				+0.2
1,286,245	+				-0.6
1,286,245	+				+0.7
1,286,246	-				+0.4
1,286,246	-				+0.2
1,286,246	-				+1.6
1,286,246	-				-0.7
1,286,246	-				+0.9
1,286,246	-				+0.9
1,286,246	-				+0.8
1,286,246	-				+0.2
1,286,246	-				+0.7
1,286,246	-				-0.4
1,286,576	+				-0.4
1,286,576	+				+1.2
1,286,576	+				-0.3
1,286,577	-				+0.0
1,286,577	-				+0.2
1,286,728	+				+1.1
1,286,728	+				-1.2
1,286,729	-		Xcc-8004.1361.1	0.10	-1.8
1,286,729	-		Xcc-8004.1361.1	0.10	-0.7
1,287,564	+				+0.1
1,287,564	+				-1.6
1,287,564	+				-0.3
1,287,565	-				-0.7
1,287,569	+				+0.5
1,287,569	+				-2.6
1,287,569	+				-1.6
1,287,569	+				-0.3
1,287,570	-				+0.8
1,287,570	-				+0.3
1,287,570	-				-2.9
1,287,633	+				-0.9
1,287,923	+		Xcc-8004.1362.1	0.28	+1.5
1,287,923	+		Xcc-8004.1362.1	0.28	+0.9
1,287,923	+		Xcc-8004.1362.1	0.28	-0.5
1,287,924	-		Xcc-8004.1362.1	0.28	-1.4
1,287,924	-		Xcc-8004.1362.1	0.28	+2.5
1,287,924	-		Xcc-8004.1362.1	0.28	-1.4
1,288,065	+		Xcc-8004.1362.1	0.42	+0.5
1,288,065	+		Xcc-8004.1362.1	0.42	+0.9
1,288,066	-		Xcc-8004.1362.1	0.42	-0.2
1,288,066	-		Xcc-8004.1362.1	0.42	-0.5
1,288,066	-		Xcc-8004.1362.1	0.42	+0.1
1,288,066	-		Xcc-8004.1362.1	0.42	-0.5
1,288,066	-		Xcc-8004.1362.1	0.42	+0.2
1,288,172	+		Xcc-8004.1362.1	0.53	-0.1
1,288,173	-		Xcc-8004.1362.1	0.53	-0.3
1,288,437	+		Xcc-8004.1362.1	0.80	-1.7
1,288,438	-		Xcc-8004.1362.1	0.80	-0.9