Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1337.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
1,266,854	+		Xcc-8004.1336.1	0.50	-1.6
1,266,855	-		Xcc-8004.1336.1	0.50	+0.0
1,266,855	-		Xcc-8004.1336.1	0.50	+0.5
1,266,869	-		Xcc-8004.1336.1	0.51	-2.3
1,267,260	-		Xcc-8004.1336.1	0.81	-2.1
1,267,260	-		Xcc-8004.1336.1	0.81	+1.5
1,267,260	-		Xcc-8004.1336.1	0.81	+1.5
1,267,260	-		Xcc-8004.1336.1	0.81	+0.0
1,267,278	+		Xcc-8004.1336.1	0.82	-2.2
1,267,284	+		Xcc-8004.1336.1	0.83	+0.9
1,267,305	+		Xcc-8004.1336.1	0.84	-0.6
1,267,305	+		Xcc-8004.1336.1	0.84	-0.9
1,267,305	+		Xcc-8004.1336.1	0.84	-2.2
1,267,306	-		Xcc-8004.1336.1	0.84	+2.5
1,267,306	-		Xcc-8004.1336.1	0.84	+0.5
1,267,443	+				-2.1
1,267,443	+				-1.6
1,267,443	+				+0.9
1,267,444	-				-1.4
1,267,444	-				-1.2
1,267,444	-				-0.9
1,267,444	-				+1.5
1,267,444	-				-1.1
1,267,445	+				-1.6
1,267,446	-				+2.5
1,267,446	-				-1.6
1,267,530	+				-1.5
1,267,531	-				+0.5
1,267,639	+				-0.3
1,267,640	-				+1.8
1,267,640	-				+0.8
1,267,742	-		Xcc-8004.1337.1	0.17	+0.7
1,267,981	+		Xcc-8004.1337.1	0.65	-1.9
1,267,982	-		Xcc-8004.1337.1	0.66	-0.0
1,267,982	-		Xcc-8004.1337.1	0.66	+0.0
1,267,982	-		Xcc-8004.1337.1	0.66	-0.9
1,267,982	-		Xcc-8004.1337.1	0.66	-0.6
1,267,984	+		Xcc-8004.1337.1	0.66	+1.0
1,267,985	-		Xcc-8004.1337.1	0.66	+0.3
1,267,985	-		Xcc-8004.1337.1	0.66	+0.4
1,267,985	-		Xcc-8004.1337.1	0.66	+0.8
1,267,985	-		Xcc-8004.1337.1	0.66	+1.0
1,267,985	-		Xcc-8004.1337.1	0.66	+1.1
1,268,419	+				+0.3
1,268,419	+				-1.0
1,268,419	+				+0.1
1,268,419	+				+0.5
1,268,453	+				-1.4
1,268,453	+				-0.4
1,268,453	+				+0.4
1,268,453	+				-1.1
1,268,453	+				+0.2
1,268,454	-				+0.5
1,268,454	-				+0.7
1,268,454	-				-1.5
1,268,454	-				-0.1
1,268,454	-				+0.0
1,268,467	+				-0.8
1,268,467	+				-0.1
1,268,467	+				-0.5
1,268,467	+				-0.8
1,268,468	-				-0.2
1,268,468	-				+0.0
1,268,479	-				-1.3
1,268,672	+		Xcc-8004.1339.1	0.37	+0.7
1,268,672	+		Xcc-8004.1339.1	0.37	-0.1
1,268,672	+		Xcc-8004.1339.1	0.37	-0.3
1,268,673	-		Xcc-8004.1339.1	0.37	-0.2
1,268,673	-		Xcc-8004.1339.1	0.37	-0.4
1,268,681	+		Xcc-8004.1339.1	0.39	-1.0
1,268,681	+		Xcc-8004.1339.1	0.39	+1.1
1,268,682	-		Xcc-8004.1339.1	0.39	-0.9
1,268,682	-		Xcc-8004.1339.1	0.39	+0.4
1,268,682	-		Xcc-8004.1339.1	0.39	+0.5
1,268,839	-		Xcc-8004.1339.1	0.75	+0.5
1,268,839	-		Xcc-8004.1339.1	0.75	+0.2
1,268,931	+				-0.1
1,268,931	+				-0.6
1,268,964	+				-0.7
1,268,965	-				-0.1
1,268,965	-				+0.0
1,268,970	+				-0.5
1,268,970	+				-0.8
1,268,971	-				-0.8
1,268,971	-				-0.3
1,268,971	-				+1.3
1,268,971	-				-1.4
1,268,971	-				-0.2
1,268,971	-				+0.3
1,269,042	+				-0.9
1,269,055	+				+1.0
1,269,055	+				+0.4
1,269,056	-				-0.3
1,269,068	+				+0.0
1,269,069	-				-1.0
1,269,069	-				+0.8
1,269,090	+				+0.3
1,269,090	+				+0.1
1,269,090	+				-1.9
1,269,090	+				-0.7
1,269,091	-				+2.5
1,269,091	-				+0.5
1,269,091	-				-0.6
1,269,091	-				-1.3
1,269,091	-				-0.8
1,269,091	-				+0.5
1,269,091	-				+1.2
1,269,091	-				-0.1