Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.130.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.127.1 and Xcc-8004.129.1 are separated by 51 nucleotidesXcc-8004.129.1 and Xcc-8004.130.1 are separated by 14 nucleotidesXcc-8004.130.1 and Xcc-8004.131.1 are separated by 157 nucleotides Xcc-8004.127.1: Xcc-8004.127.1 - Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11), at 116,642 to 117,658 Xcc-8004.127.1 Xcc-8004.129.1: Xcc-8004.129.1 - hypothetical protein, at 117,710 to 117,820 Xcc-8004.129.1 Xcc-8004.130.1: Xcc-8004.130.1 - hypothetical protein, at 117,835 to 119,037 Xcc-8004.130.1 Xcc-8004.131.1: Xcc-8004.131.1 - iron transporter, at 119,195 to 121,321 Xcc-8004.131.1 Position (kb) 117 118 119 120Strain fitness (log2 ratio) -2 -1 0 1 2at 116.878 kb on - strand, within Xcc-8004.127.1at 116.997 kb on + strand, within Xcc-8004.127.1at 116.998 kb on - strand, within Xcc-8004.127.1at 116.998 kb on - strand, within Xcc-8004.127.1at 117.152 kb on + strand, within Xcc-8004.127.1at 117.152 kb on + strand, within Xcc-8004.127.1at 117.175 kb on - strand, within Xcc-8004.127.1at 117.711 kb on + strandat 117.872 kb on + strandat 117.873 kb on - strandat 117.873 kb on - strandat 117.930 kb on - strandat 117.930 kb on - strandat 117.930 kb on - strandat 117.983 kb on + strand, within Xcc-8004.130.1at 118.277 kb on + strand, within Xcc-8004.130.1at 118.277 kb on + strand, within Xcc-8004.130.1at 118.278 kb on - strand, within Xcc-8004.130.1at 118.278 kb on - strand, within Xcc-8004.130.1at 118.298 kb on + strand, within Xcc-8004.130.1at 118.298 kb on + strand, within Xcc-8004.130.1at 118.299 kb on - strand, within Xcc-8004.130.1at 118.299 kb on - strand, within Xcc-8004.130.1at 118.299 kb on - strand, within Xcc-8004.130.1at 118.299 kb on - strand, within Xcc-8004.130.1at 118.316 kb on + strand, within Xcc-8004.130.1at 118.316 kb on + strand, within Xcc-8004.130.1at 118.316 kb on + strand, within Xcc-8004.130.1at 118.316 kb on + strand, within Xcc-8004.130.1at 118.316 kb on + strand, within Xcc-8004.130.1at 118.316 kb on + strand, within Xcc-8004.130.1at 118.317 kb on - strand, within Xcc-8004.130.1at 118.317 kb on - strand, within Xcc-8004.130.1at 118.356 kb on - strand, within Xcc-8004.130.1at 118.391 kb on + strand, within Xcc-8004.130.1at 118.391 kb on + strand, within Xcc-8004.130.1at 118.586 kb on + strand, within Xcc-8004.130.1at 118.586 kb on + strand, within Xcc-8004.130.1at 118.586 kb on + strand, within Xcc-8004.130.1at 118.587 kb on - strand, within Xcc-8004.130.1at 118.587 kb on - strand, within Xcc-8004.130.1at 118.587 kb on - strand, within Xcc-8004.130.1at 118.587 kb on - strand, within Xcc-8004.130.1at 118.587 kb on - strand, within Xcc-8004.130.1at 118.592 kb on + strand, within Xcc-8004.130.1at 118.592 kb on + strand, within Xcc-8004.130.1at 118.592 kb on + strand, within Xcc-8004.130.1at 118.593 kb on - strand, within Xcc-8004.130.1at 118.593 kb on - strand, within Xcc-8004.130.1at 118.593 kb on - strand, within Xcc-8004.130.1at 118.593 kb on - strand, within Xcc-8004.130.1at 118.593 kb on - strand, within Xcc-8004.130.1at 118.838 kb on + strand, within Xcc-8004.130.1at 118.922 kb on + strandat 118.922 kb on + strandat 118.925 kb on + strandat 118.925 kb on + strandat 118.925 kb on + strandat 118.925 kb on + strandat 118.926 kb on - strandat 118.926 kb on - strandat 118.973 kb on + strandat 118.973 kb on + strandat 118.973 kb on + strandat 118.974 kb on - strandat 118.974 kb on - strandat 118.974 kb on - strandat 118.974 kb on - strandat 119.017 kb on + strandat 119.017 kb on + strandat 119.017 kb on + strandat 119.018 kb on - strandat 119.018 kb on - strandat 119.018 kb on - strandat 119.018 kb on - strandat 119.070 kb on + strandat 119.071 kb on - strandat 119.071 kb on - strandat 119.114 kb on + strandat 119.114 kb on + strandat 119.114 kb on + strandat 119.114 kb on + strandat 119.115 kb on - strandat 119.115 kb on - strandat 119.115 kb on - strandat 119.134 kb on + strandat 119.135 kb on - strandat 119.151 kb on + strandat 119.172 kb on + strandat 119.173 kb on - strandat 119.173 kb on - strandat 119.188 kb on + strandat 119.188 kb on + strandat 119.188 kb on + strandat 119.189 kb on - strandat 119.189 kb on - strandat 119.189 kb on - strandat 119.189 kb on - strandat 119.239 kb on - strandat 119.406 kb on + strandat 119.415 kb on + strand, within Xcc-8004.131.1at 119.415 kb on + strand, within Xcc-8004.131.1at 119.416 kb on - strand, within Xcc-8004.131.1at 119.416 kb on - strand, within Xcc-8004.131.1at 119.459 kb on + strand, within Xcc-8004.131.1at 119.459 kb on + strand, within Xcc-8004.131.1at 119.460 kb on - strand, within Xcc-8004.131.1at 119.460 kb on - strand, within Xcc-8004.131.1at 119.595 kb on + strand, within Xcc-8004.131.1at 119.595 kb on + strand, within Xcc-8004.131.1at 119.595 kb on + strand, within Xcc-8004.131.1at 119.596 kb on - strand, within Xcc-8004.131.1at 119.596 kb on - strand, within Xcc-8004.131.1at 119.596 kb on - strand, within Xcc-8004.131.1at 119.596 kb on - strand, within Xcc-8004.131.1at 119.645 kb on + strand, within Xcc-8004.131.1at 119.646 kb on - strand, within Xcc-8004.131.1at 119.726 kb on + strand, within Xcc-8004.131.1at 119.726 kb on + strand, within Xcc-8004.131.1at 119.726 kb on + strand, within Xcc-8004.131.1at 119.726 kb on + strand, within Xcc-8004.131.1at 119.727 kb on - strand, within Xcc-8004.131.1at 119.727 kb on - strand, within Xcc-8004.131.1at 119.727 kb on - strand, within Xcc-8004.131.1at 119.727 kb on - strand, within Xcc-8004.131.1at 119.727 kb on - strand, within Xcc-8004.131.1at 119.789 kb on + strand, within Xcc-8004.131.1at 119.789 kb on + strand, within Xcc-8004.131.1at 119.789 kb on + strand, within Xcc-8004.131.1at 119.789 kb on + strand, within Xcc-8004.131.1at 119.789 kb on + strand, within Xcc-8004.131.1at 119.790 kb on - strand, within Xcc-8004.131.1at 119.790 kb on - strand, within Xcc-8004.131.1at 119.790 kb on - strand, within Xcc-8004.131.1at 119.790 kb on - strand, within Xcc-8004.131.1at 119.918 kb on + strand, within Xcc-8004.131.1at 119.918 kb on + strand, within Xcc-8004.131.1at 119.918 kb on + strand, within Xcc-8004.131.1at 119.918 kb on + strand, within Xcc-8004.131.1at 119.918 kb on + strand, within Xcc-8004.131.1at 119.918 kb on + strand, within Xcc-8004.131.1at 119.918 kb on + strand, within Xcc-8004.131.1at 119.918 kb on + strand, within Xcc-8004.131.1at 119.919 kb on - strand, within Xcc-8004.131.1at 119.919 kb on - strand, within Xcc-8004.131.1at 119.919 kb on - strand, within Xcc-8004.131.1at 119.919 kb on - strand, within Xcc-8004.131.1at 119.919 kb on - strand, within Xcc-8004.131.1at 119.919 kb on - strand, within Xcc-8004.131.1at 119.919 kb on - strand, within Xcc-8004.131.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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116,878 - Xcc-8004.127.1 0.23 +0.1
116,997 + Xcc-8004.127.1 0.35 -1.1
116,998 - Xcc-8004.127.1 0.35 -0.1
116,998 - Xcc-8004.127.1 0.35 +0.6
117,152 + Xcc-8004.127.1 0.50 +0.5
117,152 + Xcc-8004.127.1 0.50 +0.9
117,175 - Xcc-8004.127.1 0.52 +0.5
117,711 + +2.0
117,872 + -1.0
117,873 - +0.2
117,873 - -0.9
117,930 - +0.5
117,930 - -1.0
117,930 - -0.9
117,983 + Xcc-8004.130.1 0.12 +0.1
118,277 + Xcc-8004.130.1 0.37 +0.1
118,277 + Xcc-8004.130.1 0.37 -1.8
118,278 - Xcc-8004.130.1 0.37 -1.7
118,278 - Xcc-8004.130.1 0.37 -1.5
118,298 + Xcc-8004.130.1 0.38 -0.2
118,298 + Xcc-8004.130.1 0.38 +0.8
118,299 - Xcc-8004.130.1 0.39 +0.1
118,299 - Xcc-8004.130.1 0.39 -1.7
118,299 - Xcc-8004.130.1 0.39 -0.3
118,299 - Xcc-8004.130.1 0.39 +0.1
118,316 + Xcc-8004.130.1 0.40 -1.7
118,316 + Xcc-8004.130.1 0.40 -0.5
118,316 + Xcc-8004.130.1 0.40 +0.9
118,316 + Xcc-8004.130.1 0.40 +0.1
118,316 + Xcc-8004.130.1 0.40 +1.5
118,316 + Xcc-8004.130.1 0.40 +0.1
118,317 - Xcc-8004.130.1 0.40 -0.1
118,317 - Xcc-8004.130.1 0.40 -0.0
118,356 - Xcc-8004.130.1 0.43 -1.5
118,391 + Xcc-8004.130.1 0.46 -0.4
118,391 + Xcc-8004.130.1 0.46 -1.5
118,586 + Xcc-8004.130.1 0.62 -0.8
118,586 + Xcc-8004.130.1 0.62 +0.9
118,586 + Xcc-8004.130.1 0.62 +0.5
118,587 - Xcc-8004.130.1 0.63 +0.9
118,587 - Xcc-8004.130.1 0.63 +0.2
118,587 - Xcc-8004.130.1 0.63 +0.9
118,587 - Xcc-8004.130.1 0.63 -0.5
118,587 - Xcc-8004.130.1 0.63 -0.7
118,592 + Xcc-8004.130.1 0.63 -0.9
118,592 + Xcc-8004.130.1 0.63 -1.8
118,592 + Xcc-8004.130.1 0.63 -1.9
118,593 - Xcc-8004.130.1 0.63 -1.9
118,593 - Xcc-8004.130.1 0.63 -0.2
118,593 - Xcc-8004.130.1 0.63 +0.1
118,593 - Xcc-8004.130.1 0.63 +0.3
118,593 - Xcc-8004.130.1 0.63 +0.1
118,838 + Xcc-8004.130.1 0.83 -1.3
118,922 + +0.6
118,922 + -1.8
118,925 + -1.7
118,925 + +0.2
118,925 + -2.6
118,925 + +0.1
118,926 - -0.7
118,926 - -2.0
118,973 + +0.9
118,973 + -2.4
118,973 + -1.4
118,974 - -0.9
118,974 - -0.5
118,974 - -0.8
118,974 - -1.2
119,017 + -0.8
119,017 + +1.5
119,017 + -0.5
119,018 - -0.7
119,018 - +1.3
119,018 - +0.3
119,018 - +0.7
119,070 + -0.9
119,071 - +0.1
119,071 - +0.5
119,114 + -0.2
119,114 + -0.3
119,114 + +0.7
119,114 + +0.7
119,115 - +0.1
119,115 - -0.9
119,115 - +1.5
119,134 + +0.7
119,135 - +0.6
119,151 + -0.1
119,172 + +0.7
119,173 - +0.5
119,173 - +0.9
119,188 + +1.1
119,188 + +0.1
119,188 + -0.8
119,189 - +1.6
119,189 - -0.3
119,189 - -0.9
119,189 - -0.8
119,239 - -1.3
119,406 + +2.5
119,415 + Xcc-8004.131.1 0.10 +0.6
119,415 + Xcc-8004.131.1 0.10 -0.8
119,416 - Xcc-8004.131.1 0.10 +0.5
119,416 - Xcc-8004.131.1 0.10 +0.0
119,459 + Xcc-8004.131.1 0.12 -1.1
119,459 + Xcc-8004.131.1 0.12 -1.0
119,460 - Xcc-8004.131.1 0.12 +0.4
119,460 - Xcc-8004.131.1 0.12 +0.8
119,595 + Xcc-8004.131.1 0.19 -0.6
119,595 + Xcc-8004.131.1 0.19 -0.8
119,595 + Xcc-8004.131.1 0.19 +0.0
119,596 - Xcc-8004.131.1 0.19 -1.6
119,596 - Xcc-8004.131.1 0.19 -0.8
119,596 - Xcc-8004.131.1 0.19 +0.5
119,596 - Xcc-8004.131.1 0.19 +0.4
119,645 + Xcc-8004.131.1 0.21 -0.9
119,646 - Xcc-8004.131.1 0.21 -0.3
119,726 + Xcc-8004.131.1 0.25 -0.2
119,726 + Xcc-8004.131.1 0.25 -0.6
119,726 + Xcc-8004.131.1 0.25 -0.8
119,726 + Xcc-8004.131.1 0.25 -0.5
119,727 - Xcc-8004.131.1 0.25 +0.5
119,727 - Xcc-8004.131.1 0.25 +0.5
119,727 - Xcc-8004.131.1 0.25 +0.1
119,727 - Xcc-8004.131.1 0.25 +0.4
119,727 - Xcc-8004.131.1 0.25 -0.2
119,789 + Xcc-8004.131.1 0.28 -0.6
119,789 + Xcc-8004.131.1 0.28 +0.7
119,789 + Xcc-8004.131.1 0.28 +0.1
119,789 + Xcc-8004.131.1 0.28 -0.3
119,789 + Xcc-8004.131.1 0.28 -0.0
119,790 - Xcc-8004.131.1 0.28 +0.8
119,790 - Xcc-8004.131.1 0.28 -0.1
119,790 - Xcc-8004.131.1 0.28 +0.1
119,790 - Xcc-8004.131.1 0.28 -1.4
119,918 + Xcc-8004.131.1 0.34 -1.1
119,918 + Xcc-8004.131.1 0.34 +0.2
119,918 + Xcc-8004.131.1 0.34 +0.7
119,918 + Xcc-8004.131.1 0.34 -0.4
119,918 + Xcc-8004.131.1 0.34 -2.1
119,918 + Xcc-8004.131.1 0.34 -0.7
119,918 + Xcc-8004.131.1 0.34 +0.0
119,918 + Xcc-8004.131.1 0.34 +0.8
119,919 - Xcc-8004.131.1 0.34 +0.2
119,919 - Xcc-8004.131.1 0.34 -1.4
119,919 - Xcc-8004.131.1 0.34 +0.9
119,919 - Xcc-8004.131.1 0.34 -0.5
119,919 - Xcc-8004.131.1 0.34 +1.3
119,919 - Xcc-8004.131.1 0.34 -0.2
119,919 - Xcc-8004.131.1 0.34 -1.2

Or see this region's nucleotide sequence