Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1203.1 and Xcc-8004.1204.1 are separated by 128 nucleotides Xcc-8004.1204.1 and Xcc-8004.1205.1 are separated by 18 nucleotides Xcc-8004.1205.1 and Xcc-8004.1206.1 are separated by 138 nucleotides
Xcc-8004.1203.1: Xcc-8004.1203.1 - Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1), at 1,135,595 to 1,136,533
Xcc-8004.1203.1
Xcc-8004.1204.1: Xcc-8004.1204.1 - ATP-dependent DNA helicase RecG (EC 3.6.1.-), at 1,136,662 to 1,138,803
Xcc-8004.1204.1
Xcc-8004.1205.1: Xcc-8004.1205.1 - hypothetical protein, at 1,138,822 to 1,139,202
Xcc-8004.1205.1
Xcc-8004.1206.1: Xcc-8004.1206.1 - D-galactarate dehydratase (EC 4.2.1.42), at 1,139,341 to 1,140,885
Xcc-8004.1206.1
Position (kb) 1136
1137
1138
1139 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1135.818 kb on + strand, within Xcc-8004.1203.1 at 1135.818 kb on + strand, within Xcc-8004.1203.1 at 1135.818 kb on + strand, within Xcc-8004.1203.1 at 1135.819 kb on - strand, within Xcc-8004.1203.1 at 1135.825 kb on - strand, within Xcc-8004.1203.1 at 1135.878 kb on + strand, within Xcc-8004.1203.1 at 1135.878 kb on + strand, within Xcc-8004.1203.1 at 1135.999 kb on + strand, within Xcc-8004.1203.1 at 1136.047 kb on + strand, within Xcc-8004.1203.1 at 1136.337 kb on + strand, within Xcc-8004.1203.1 at 1136.337 kb on + strand, within Xcc-8004.1203.1 at 1136.337 kb on + strand, within Xcc-8004.1203.1 at 1136.337 kb on + strand, within Xcc-8004.1203.1 at 1136.338 kb on - strand, within Xcc-8004.1203.1 at 1136.338 kb on - strand, within Xcc-8004.1203.1 at 1136.833 kb on - strand at 1136.951 kb on + strand, within Xcc-8004.1204.1 at 1136.952 kb on - strand, within Xcc-8004.1204.1 at 1137.175 kb on + strand, within Xcc-8004.1204.1 at 1137.317 kb on + strand, within Xcc-8004.1204.1 at 1137.318 kb on - strand, within Xcc-8004.1204.1 at 1137.991 kb on + strand, within Xcc-8004.1204.1 at 1137.991 kb on + strand, within Xcc-8004.1204.1 at 1138.650 kb on - strand at 1138.650 kb on - strand at 1138.919 kb on + strand, within Xcc-8004.1205.1 at 1138.920 kb on - strand, within Xcc-8004.1205.1 at 1138.971 kb on - strand, within Xcc-8004.1205.1 at 1138.971 kb on - strand, within Xcc-8004.1205.1 at 1138.985 kb on - strand, within Xcc-8004.1205.1 at 1139.121 kb on - strand, within Xcc-8004.1205.1 at 1139.153 kb on + strand, within Xcc-8004.1205.1 at 1139.185 kb on - strand at 1139.295 kb on - strand at 1139.381 kb on + strand at 1139.381 kb on + strand at 1139.381 kb on + strand at 1139.381 kb on + strand at 1139.382 kb on - strand at 1139.423 kb on - strand at 1139.433 kb on - strand at 1139.502 kb on + strand, within Xcc-8004.1206.1 at 1139.676 kb on - strand, within Xcc-8004.1206.1 at 1139.775 kb on + strand, within Xcc-8004.1206.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 1,135,818 + Xcc-8004.1203.1 0.24 -0.2 1,135,818 + Xcc-8004.1203.1 0.24 +0.5 1,135,818 + Xcc-8004.1203.1 0.24 +0.1 1,135,819 - Xcc-8004.1203.1 0.24 -0.3 1,135,825 - Xcc-8004.1203.1 0.24 +0.2 1,135,878 + Xcc-8004.1203.1 0.30 +0.3 1,135,878 + Xcc-8004.1203.1 0.30 +0.1 1,135,999 + Xcc-8004.1203.1 0.43 -0.8 1,136,047 + Xcc-8004.1203.1 0.48 -0.2 1,136,337 + Xcc-8004.1203.1 0.79 -0.7 1,136,337 + Xcc-8004.1203.1 0.79 -0.0 1,136,337 + Xcc-8004.1203.1 0.79 -0.0 1,136,337 + Xcc-8004.1203.1 0.79 +0.3 1,136,338 - Xcc-8004.1203.1 0.79 -0.2 1,136,338 - Xcc-8004.1203.1 0.79 +0.0 1,136,833 - -0.1 1,136,951 + Xcc-8004.1204.1 0.13 +0.3 1,136,952 - Xcc-8004.1204.1 0.14 +1.0 1,137,175 + Xcc-8004.1204.1 0.24 +1.0 1,137,317 + Xcc-8004.1204.1 0.31 +1.5 1,137,318 - Xcc-8004.1204.1 0.31 +0.5 1,137,991 + Xcc-8004.1204.1 0.62 +0.2 1,137,991 + Xcc-8004.1204.1 0.62 -1.5 1,138,650 - -0.0 1,138,650 - +0.5 1,138,919 + Xcc-8004.1205.1 0.25 -1.0 1,138,920 - Xcc-8004.1205.1 0.26 +1.4 1,138,971 - Xcc-8004.1205.1 0.39 -0.8 1,138,971 - Xcc-8004.1205.1 0.39 +1.5 1,138,985 - Xcc-8004.1205.1 0.43 +2.1 1,139,121 - Xcc-8004.1205.1 0.78 +0.4 1,139,153 + Xcc-8004.1205.1 0.87 -0.0 1,139,185 - -1.0 1,139,295 - +0.3 1,139,381 + -1.7 1,139,381 + +0.4 1,139,381 + +1.3 1,139,381 + -0.2 1,139,382 - +0.6 1,139,423 - -0.2 1,139,433 - -0.3 1,139,502 + Xcc-8004.1206.1 0.10 -2.3 1,139,676 - Xcc-8004.1206.1 0.22 +1.1 1,139,775 + Xcc-8004.1206.1 0.28 +0.2
Or see this region's nucleotide sequence