Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1199.1 and Xcc-8004.1200.1 are separated by 17 nucleotides Xcc-8004.1200.1 and Xcc-8004.1202.1 are separated by 2 nucleotides Xcc-8004.1202.1 and Xcc-8004.1203.1 are separated by 71 nucleotides
Xcc-8004.1199.1: Xcc-8004.1199.1 - Citrate synthase (si) (EC 2.3.3.1), at 1,133,762 to 1,135,120
Xcc-8004.1199.1
Xcc-8004.1200.1: Xcc-8004.1200.1 - hypothetical protein, at 1,135,138 to 1,135,278
Xcc-8004.1200.1
Xcc-8004.1202.1: Xcc-8004.1202.1 - LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent, at 1,135,281 to 1,135,523
Xcc-8004.1202.1
Xcc-8004.1203.1: Xcc-8004.1203.1 - Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1), at 1,135,595 to 1,136,533
Xcc-8004.1203.1
Position (kb) 1135
1136 Strain fitness (log2 ratio) -1
0
1 at 1135.181 kb on + strand, within Xcc-8004.1200.1 at 1135.262 kb on + strand, within Xcc-8004.1200.1 at 1135.629 kb on + strand at 1135.630 kb on - strand at 1135.630 kb on - strand at 1135.630 kb on - strand at 1135.647 kb on + strand at 1135.648 kb on - strand at 1135.648 kb on - strand at 1135.818 kb on + strand, within Xcc-8004.1203.1 at 1135.818 kb on + strand, within Xcc-8004.1203.1 at 1135.818 kb on + strand, within Xcc-8004.1203.1 at 1135.819 kb on - strand, within Xcc-8004.1203.1 at 1135.825 kb on - strand, within Xcc-8004.1203.1 at 1135.878 kb on + strand, within Xcc-8004.1203.1 at 1135.878 kb on + strand, within Xcc-8004.1203.1 at 1135.999 kb on + strand, within Xcc-8004.1203.1 at 1136.047 kb on + strand, within Xcc-8004.1203.1 at 1136.337 kb on + strand, within Xcc-8004.1203.1 at 1136.337 kb on + strand, within Xcc-8004.1203.1 at 1136.337 kb on + strand, within Xcc-8004.1203.1 at 1136.337 kb on + strand, within Xcc-8004.1203.1 at 1136.338 kb on - strand, within Xcc-8004.1203.1 at 1136.338 kb on - strand, within Xcc-8004.1203.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 1,135,181 + Xcc-8004.1200.1 0.30 -1.2 1,135,262 + Xcc-8004.1200.1 0.88 -0.9 1,135,629 + -0.0 1,135,630 - -0.7 1,135,630 - -0.3 1,135,630 - -0.9 1,135,647 + +0.0 1,135,648 - -0.1 1,135,648 - +1.0 1,135,818 + Xcc-8004.1203.1 0.24 -0.2 1,135,818 + Xcc-8004.1203.1 0.24 +0.5 1,135,818 + Xcc-8004.1203.1 0.24 +0.1 1,135,819 - Xcc-8004.1203.1 0.24 -0.3 1,135,825 - Xcc-8004.1203.1 0.24 +0.2 1,135,878 + Xcc-8004.1203.1 0.30 +0.3 1,135,878 + Xcc-8004.1203.1 0.30 +0.1 1,135,999 + Xcc-8004.1203.1 0.43 -0.8 1,136,047 + Xcc-8004.1203.1 0.48 -0.2 1,136,337 + Xcc-8004.1203.1 0.79 -0.7 1,136,337 + Xcc-8004.1203.1 0.79 -0.0 1,136,337 + Xcc-8004.1203.1 0.79 -0.0 1,136,337 + Xcc-8004.1203.1 0.79 +0.3 1,136,338 - Xcc-8004.1203.1 0.79 -0.2 1,136,338 - Xcc-8004.1203.1 0.79 +0.0
Or see this region's nucleotide sequence