Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1172.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1171.1 and Xcc-8004.1172.1 overlap by 26 nucleotidesXcc-8004.1172.1 and Xcc-8004.1174.1 are separated by 293 nucleotides Xcc-8004.1171.1: Xcc-8004.1171.1 - Reductase, at 1,106,044 to 1,106,874 Xcc-8004.1171.1 Xcc-8004.1172.1: Xcc-8004.1172.1 - Transcriptional regulator, at 1,106,849 to 1,107,820 Xcc-8004.1172.1 Xcc-8004.1174.1: Xcc-8004.1174.1 - Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid, at 1,108,114 to 1,109,634 Xcc-8004.1174.1 Position (kb) 1106 1107 1108Strain fitness (log2 ratio) -3 -2 -1 0 1at 1105.883 kb on + strandat 1105.968 kb on - strandat 1106.111 kb on - strandat 1106.265 kb on + strand, within Xcc-8004.1171.1at 1106.265 kb on + strand, within Xcc-8004.1171.1at 1106.295 kb on - strand, within Xcc-8004.1171.1at 1106.334 kb on - strand, within Xcc-8004.1171.1at 1106.436 kb on - strand, within Xcc-8004.1171.1at 1106.436 kb on - strand, within Xcc-8004.1171.1at 1106.699 kb on + strand, within Xcc-8004.1171.1at 1106.699 kb on + strand, within Xcc-8004.1171.1at 1106.700 kb on - strand, within Xcc-8004.1171.1at 1106.700 kb on - strand, within Xcc-8004.1171.1at 1106.700 kb on - strand, within Xcc-8004.1171.1at 1106.841 kb on + strandat 1106.844 kb on + strandat 1106.862 kb on + strandat 1106.862 kb on + strandat 1106.863 kb on - strandat 1107.104 kb on + strand, within Xcc-8004.1172.1at 1107.419 kb on + strand, within Xcc-8004.1172.1at 1107.482 kb on + strand, within Xcc-8004.1172.1at 1107.483 kb on - strand, within Xcc-8004.1172.1at 1107.483 kb on - strand, within Xcc-8004.1172.1at 1107.540 kb on - strand, within Xcc-8004.1172.1at 1107.590 kb on + strand, within Xcc-8004.1172.1at 1107.590 kb on + strand, within Xcc-8004.1172.1at 1107.744 kb on + strandat 1107.846 kb on + strandat 1107.901 kb on - strandat 1107.901 kb on - strandat 1107.905 kb on + strandat 1107.906 kb on - strandat 1107.906 kb on - strandat 1108.016 kb on + strandat 1108.124 kb on + strandat 1108.125 kb on - strandat 1108.193 kb on + strandat 1108.280 kb on + strand, within Xcc-8004.1174.1at 1108.281 kb on - strand, within Xcc-8004.1174.1at 1108.281 kb on - strand, within Xcc-8004.1174.1at 1108.304 kb on + strand, within Xcc-8004.1174.1at 1108.305 kb on - strand, within Xcc-8004.1174.1at 1108.319 kb on + strand, within Xcc-8004.1174.1at 1108.319 kb on + strand, within Xcc-8004.1174.1at 1108.319 kb on + strand, within Xcc-8004.1174.1at 1108.320 kb on - strand, within Xcc-8004.1174.1at 1108.322 kb on + strand, within Xcc-8004.1174.1at 1108.388 kb on + strand, within Xcc-8004.1174.1at 1108.389 kb on - strand, within Xcc-8004.1174.1at 1108.414 kb on - strand, within Xcc-8004.1174.1at 1108.428 kb on + strand, within Xcc-8004.1174.1at 1108.463 kb on + strand, within Xcc-8004.1174.1at 1108.559 kb on + strand, within Xcc-8004.1174.1at 1108.559 kb on + strand, within Xcc-8004.1174.1at 1108.560 kb on - strand, within Xcc-8004.1174.1at 1108.772 kb on + strand, within Xcc-8004.1174.1at 1108.773 kb on - strand, within Xcc-8004.1174.1at 1108.773 kb on - strand, within Xcc-8004.1174.1at 1108.773 kb on - strand, within Xcc-8004.1174.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,105,883 + +0.5
1,105,968 - +0.2
1,106,111 - -1.5
1,106,265 + Xcc-8004.1171.1 0.27 -0.9
1,106,265 + Xcc-8004.1171.1 0.27 +0.6
1,106,295 - Xcc-8004.1171.1 0.30 +0.3
1,106,334 - Xcc-8004.1171.1 0.35 -0.5
1,106,436 - Xcc-8004.1171.1 0.47 +1.2
1,106,436 - Xcc-8004.1171.1 0.47 -0.2
1,106,699 + Xcc-8004.1171.1 0.79 +0.1
1,106,699 + Xcc-8004.1171.1 0.79 -1.0
1,106,700 - Xcc-8004.1171.1 0.79 +0.8
1,106,700 - Xcc-8004.1171.1 0.79 +0.4
1,106,700 - Xcc-8004.1171.1 0.79 -3.0
1,106,841 + +1.2
1,106,844 + -0.4
1,106,862 + -1.2
1,106,862 + -0.8
1,106,863 - -0.8
1,107,104 + Xcc-8004.1172.1 0.26 -0.5
1,107,419 + Xcc-8004.1172.1 0.59 -1.4
1,107,482 + Xcc-8004.1172.1 0.65 -0.0
1,107,483 - Xcc-8004.1172.1 0.65 -2.3
1,107,483 - Xcc-8004.1172.1 0.65 +1.7
1,107,540 - Xcc-8004.1172.1 0.71 -1.7
1,107,590 + Xcc-8004.1172.1 0.76 -1.7
1,107,590 + Xcc-8004.1172.1 0.76 +0.0
1,107,744 + -0.9
1,107,846 + +0.7
1,107,901 - -1.1
1,107,901 - +0.1
1,107,905 + -0.2
1,107,906 - +1.3
1,107,906 - -0.7
1,108,016 + -0.2
1,108,124 + +0.1
1,108,125 - +0.8
1,108,193 + +0.8
1,108,280 + Xcc-8004.1174.1 0.11 +1.2
1,108,281 - Xcc-8004.1174.1 0.11 -1.7
1,108,281 - Xcc-8004.1174.1 0.11 -1.3
1,108,304 + Xcc-8004.1174.1 0.12 +0.8
1,108,305 - Xcc-8004.1174.1 0.13 -0.3
1,108,319 + Xcc-8004.1174.1 0.13 -0.5
1,108,319 + Xcc-8004.1174.1 0.13 +0.6
1,108,319 + Xcc-8004.1174.1 0.13 -0.1
1,108,320 - Xcc-8004.1174.1 0.14 -0.1
1,108,322 + Xcc-8004.1174.1 0.14 -0.2
1,108,388 + Xcc-8004.1174.1 0.18 -1.1
1,108,389 - Xcc-8004.1174.1 0.18 -1.5
1,108,414 - Xcc-8004.1174.1 0.20 -0.3
1,108,428 + Xcc-8004.1174.1 0.21 -0.3
1,108,463 + Xcc-8004.1174.1 0.23 -0.2
1,108,559 + Xcc-8004.1174.1 0.29 -0.9
1,108,559 + Xcc-8004.1174.1 0.29 -0.4
1,108,560 - Xcc-8004.1174.1 0.29 -0.6
1,108,772 + Xcc-8004.1174.1 0.43 -0.3
1,108,773 - Xcc-8004.1174.1 0.43 -0.1
1,108,773 - Xcc-8004.1174.1 0.43 +0.5
1,108,773 - Xcc-8004.1174.1 0.43 -1.2

Or see this region's nucleotide sequence