Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1162.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
1,094,275	+		Xcc-8004.1159.1	0.47	-1.0
1,094,536	+		Xcc-8004.1159.1	0.90	+0.6
1,094,536	+		Xcc-8004.1159.1	0.90	+0.2
1,094,536	+		Xcc-8004.1159.1	0.90	+0.6
1,094,536	+		Xcc-8004.1159.1	0.90	-1.1
1,094,537	-				+0.8
1,094,537	-				+0.2
1,094,597	-				-0.4
1,095,168	-				-1.6
1,095,600	+		Xcc-8004.1162.1	0.64	-1.2
1,095,647	+		Xcc-8004.1162.1	0.72	+1.5
1,095,647	+		Xcc-8004.1162.1	0.72	-0.8
1,095,648	-		Xcc-8004.1162.1	0.72	+0.8
1,095,648	-		Xcc-8004.1162.1	0.72	-1.2
1,095,648	-		Xcc-8004.1162.1	0.72	-0.9
1,095,791	+				+0.2
1,095,791	+				+0.0
1,095,792	-				+1.9
1,095,792	-				+0.8
1,095,792	-				+0.5
1,095,792	-				-0.4
1,095,898	+				-0.1
1,095,898	+				+0.7
1,095,899	-				-0.6
1,095,947	-		Xcc-8004.1163.1	0.10	-0.4
1,096,555	+		Xcc-8004.1163.1	0.57	+0.5
1,096,555	+		Xcc-8004.1163.1	0.57	-0.5
1,096,555	+		Xcc-8004.1163.1	0.57	+0.8
1,096,555	+		Xcc-8004.1163.1	0.57	-1.1
1,096,555	+		Xcc-8004.1163.1	0.57	-1.6
1,096,556	-		Xcc-8004.1163.1	0.57	+0.6
1,096,556	-		Xcc-8004.1163.1	0.57	+1.2
1,096,556	-		Xcc-8004.1163.1	0.57	-1.6