Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1006.1 and Xcc-8004.1007.1 are separated by 60 nucleotides Xcc-8004.1007.1 and Xcc-8004.1008.1 are separated by 368 nucleotides
Xcc-8004.1006.1: Xcc-8004.1006.1 - Glutaredoxin-like protein, at 951,295 to 952,221
Xcc-8004.1006.1
Xcc-8004.1007.1: Xcc-8004.1007.1 - acetylxylan esterase, at 952,282 to 953,058
Xcc-8004.1007.1
Xcc-8004.1008.1: Xcc-8004.1008.1 - FIG01211317: hypothetical protein, at 953,427 to 954,122
Xcc-8004.1008.1
Position (kb) 952
953
954 Strain fitness (log2 ratio) -1
0
1
2 at 951.299 kb on + strand at 951.299 kb on + strand at 951.300 kb on - strand at 951.300 kb on - strand at 951.359 kb on + strand at 951.360 kb on - strand at 951.360 kb on - strand at 951.369 kb on + strand at 951.408 kb on + strand, within Xcc-8004.1006.1 at 952.259 kb on + strand at 952.259 kb on + strand at 952.259 kb on + strand at 952.259 kb on + strand at 952.260 kb on - strand at 952.303 kb on + strand at 952.469 kb on - strand, within Xcc-8004.1007.1 at 952.806 kb on - strand, within Xcc-8004.1007.1 at 953.285 kb on + strand at 953.285 kb on + strand at 953.306 kb on + strand at 953.306 kb on + strand at 953.307 kb on - strand at 953.307 kb on - strand at 953.307 kb on - strand at 953.310 kb on + strand at 953.311 kb on - strand at 953.545 kb on + strand, within Xcc-8004.1008.1 at 953.545 kb on + strand, within Xcc-8004.1008.1 at 953.546 kb on - strand, within Xcc-8004.1008.1 at 953.546 kb on - strand, within Xcc-8004.1008.1 at 953.723 kb on - strand, within Xcc-8004.1008.1 at 953.801 kb on + strand, within Xcc-8004.1008.1 at 953.964 kb on + strand, within Xcc-8004.1008.1 at 953.964 kb on + strand, within Xcc-8004.1008.1 at 953.964 kb on + strand, within Xcc-8004.1008.1 at 954.019 kb on + strand, within Xcc-8004.1008.1 at 954.020 kb on - strand, within Xcc-8004.1008.1 at 954.022 kb on + strand, within Xcc-8004.1008.1 at 954.022 kb on + strand, within Xcc-8004.1008.1 at 954.022 kb on + strand, within Xcc-8004.1008.1 at 954.023 kb on - strand, within Xcc-8004.1008.1 at 954.026 kb on - strand, within Xcc-8004.1008.1 at 954.026 kb on - strand, within Xcc-8004.1008.1 at 954.026 kb on - strand, within Xcc-8004.1008.1 at 954.031 kb on + strand, within Xcc-8004.1008.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 951,299 + +0.4 951,299 + -0.7 951,300 - +0.5 951,300 - -1.1 951,359 + +0.9 951,360 - -1.2 951,360 - -0.1 951,369 + -0.4 951,408 + Xcc-8004.1006.1 0.12 -0.9 952,259 + -0.2 952,259 + -0.3 952,259 + -0.2 952,259 + +0.5 952,260 - -0.2 952,303 + +0.1 952,469 - Xcc-8004.1007.1 0.24 -1.1 952,806 - Xcc-8004.1007.1 0.67 -0.2 953,285 + +0.7 953,285 + +0.3 953,306 + +0.9 953,306 + -0.0 953,307 - -0.5 953,307 - -1.2 953,307 - +0.6 953,310 + +0.8 953,311 - +0.7 953,545 + Xcc-8004.1008.1 0.17 -1.4 953,545 + Xcc-8004.1008.1 0.17 +0.4 953,546 - Xcc-8004.1008.1 0.17 +1.2 953,546 - Xcc-8004.1008.1 0.17 -0.1 953,723 - Xcc-8004.1008.1 0.43 +0.5 953,801 + Xcc-8004.1008.1 0.54 +1.2 953,964 + Xcc-8004.1008.1 0.77 -0.5 953,964 + Xcc-8004.1008.1 0.77 +0.1 953,964 + Xcc-8004.1008.1 0.77 +0.7 954,019 + Xcc-8004.1008.1 0.85 -0.5 954,020 - Xcc-8004.1008.1 0.85 +0.2 954,022 + Xcc-8004.1008.1 0.85 -0.4 954,022 + Xcc-8004.1008.1 0.85 -0.4 954,022 + Xcc-8004.1008.1 0.85 -0.9 954,023 - Xcc-8004.1008.1 0.86 -0.7 954,026 - Xcc-8004.1008.1 0.86 +2.5 954,026 - Xcc-8004.1008.1 0.86 -0.4 954,026 - Xcc-8004.1008.1 0.86 -1.0 954,031 + Xcc-8004.1008.1 0.87 +0.3
Or see this region's nucleotide sequence