Strain Fitness in Marinobacter adhaerens HP15 around HP15_4064

Experiment: m.b. Aluminum chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_4062 and HP15_4063 are separated by 4 nucleotidesHP15_4063 and HP15_4064 overlap by 4 nucleotidesHP15_4064 and HP15_4065 overlap by 4 nucleotides HP15_4062: HP15_4062 - spermidine/putrescine ABC transporter, ATP-binding protein, at 4,296,679 to 4,297,800 _4062 HP15_4063: HP15_4063 - spermidine/putrescine ABC transporter, permease protein PotB, at 4,297,805 to 4,298,650 _4063 HP15_4064: HP15_4064 - spermidine/putrescine ABC transporter membrane protein, at 4,298,647 to 4,299,420 _4064 HP15_4065: HP15_4065 - spermidine/putrescine ABC transporter periplasmic substrate-binding protein, at 4,299,417 to 4,300,457 _4065 Position (kb) 4298 4299 4300Strain fitness (log2 ratio) -2 -1 0 1at 4297.656 kb on - strand, within HP15_4062at 4297.705 kb on - strandat 4297.800 kb on + strandat 4297.822 kb on - strandat 4297.824 kb on + strandat 4297.840 kb on + strandat 4297.909 kb on - strand, within HP15_4063at 4298.063 kb on + strand, within HP15_4063at 4298.104 kb on - strand, within HP15_4063at 4298.136 kb on - strand, within HP15_4063at 4298.195 kb on + strand, within HP15_4063at 4298.236 kb on + strand, within HP15_4063at 4298.244 kb on - strand, within HP15_4063at 4298.255 kb on + strand, within HP15_4063at 4298.357 kb on - strand, within HP15_4063at 4298.391 kb on + strand, within HP15_4063at 4298.417 kb on + strand, within HP15_4063at 4298.417 kb on + strand, within HP15_4063at 4298.487 kb on + strand, within HP15_4063at 4298.633 kb on + strandat 4298.646 kb on + strandat 4298.675 kb on + strandat 4298.683 kb on - strandat 4298.683 kb on - strandat 4298.685 kb on + strandat 4298.685 kb on + strandat 4298.760 kb on - strand, within HP15_4064at 4298.761 kb on - strand, within HP15_4064at 4298.791 kb on - strand, within HP15_4064at 4298.858 kb on - strand, within HP15_4064at 4298.902 kb on + strand, within HP15_4064at 4299.029 kb on + strand, within HP15_4064at 4299.032 kb on - strand, within HP15_4064at 4299.093 kb on - strand, within HP15_4064at 4299.162 kb on + strand, within HP15_4064at 4299.221 kb on + strand, within HP15_4064at 4299.221 kb on + strand, within HP15_4064at 4299.221 kb on + strand, within HP15_4064at 4299.221 kb on + strand, within HP15_4064at 4299.229 kb on - strand, within HP15_4064at 4299.229 kb on - strand, within HP15_4064at 4299.229 kb on - strand, within HP15_4064at 4299.229 kb on - strand, within HP15_4064at 4299.229 kb on - strand, within HP15_4064at 4299.231 kb on + strand, within HP15_4064at 4299.302 kb on + strand, within HP15_4064at 4299.310 kb on - strand, within HP15_4064at 4299.372 kb on + strandat 4299.454 kb on + strandat 4299.462 kb on + strandat 4299.472 kb on - strandat 4299.477 kb on - strandat 4299.505 kb on + strandat 4299.513 kb on - strandat 4299.536 kb on + strand, within HP15_4065at 4299.564 kb on - strand, within HP15_4065at 4299.574 kb on - strand, within HP15_4065at 4299.584 kb on - strand, within HP15_4065at 4299.605 kb on - strand, within HP15_4065at 4299.633 kb on + strand, within HP15_4065at 4299.633 kb on + strand, within HP15_4065at 4299.633 kb on + strand, within HP15_4065at 4299.633 kb on + strand, within HP15_4065at 4299.641 kb on + strand, within HP15_4065at 4299.641 kb on - strand, within HP15_4065at 4299.641 kb on - strand, within HP15_4065at 4299.803 kb on + strand, within HP15_4065at 4299.859 kb on + strand, within HP15_4065at 4299.947 kb on + strand, within HP15_4065at 4299.949 kb on - strand, within HP15_4065at 4300.076 kb on - strand, within HP15_4065at 4300.237 kb on - strand, within HP15_4065at 4300.291 kb on + strand, within HP15_4065at 4300.370 kb on + strandat 4300.373 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM
remove
4,297,656 - HP15_4062 0.87 -0.4
4,297,705 - -0.7
4,297,800 + -0.9
4,297,822 - -1.9
4,297,824 + -0.8
4,297,840 + -0.6
4,297,909 - HP15_4063 0.12 -0.5
4,298,063 + HP15_4063 0.30 -0.7
4,298,104 - HP15_4063 0.35 -1.7
4,298,136 - HP15_4063 0.39 -1.1
4,298,195 + HP15_4063 0.46 -0.7
4,298,236 + HP15_4063 0.51 -1.1
4,298,244 - HP15_4063 0.52 -0.1
4,298,255 + HP15_4063 0.53 -1.7
4,298,357 - HP15_4063 0.65 -0.5
4,298,391 + HP15_4063 0.69 -0.9
4,298,417 + HP15_4063 0.72 -0.9
4,298,417 + HP15_4063 0.72 -0.5
4,298,487 + HP15_4063 0.81 -0.8
4,298,633 + -0.4
4,298,646 + +0.4
4,298,675 + -2.3
4,298,683 - -0.7
4,298,683 - -0.2
4,298,685 + -0.2
4,298,685 + +1.5
4,298,760 - HP15_4064 0.15 -0.6
4,298,761 - HP15_4064 0.15 +0.1
4,298,791 - HP15_4064 0.19 -0.2
4,298,858 - HP15_4064 0.27 -0.4
4,298,902 + HP15_4064 0.33 -1.3
4,299,029 + HP15_4064 0.49 -1.3
4,299,032 - HP15_4064 0.50 -0.1
4,299,093 - HP15_4064 0.58 -1.7
4,299,162 + HP15_4064 0.67 -0.4
4,299,221 + HP15_4064 0.74 -0.3
4,299,221 + HP15_4064 0.74 -1.0
4,299,221 + HP15_4064 0.74 -1.1
4,299,221 + HP15_4064 0.74 -1.0
4,299,229 - HP15_4064 0.75 -0.8
4,299,229 - HP15_4064 0.75 -1.4
4,299,229 - HP15_4064 0.75 -1.6
4,299,229 - HP15_4064 0.75 +0.5
4,299,229 - HP15_4064 0.75 -0.9
4,299,231 + HP15_4064 0.75 +0.3
4,299,302 + HP15_4064 0.85 -0.8
4,299,310 - HP15_4064 0.86 -0.7
4,299,372 + -0.6
4,299,454 + -0.7
4,299,462 + -0.5
4,299,472 - -0.2
4,299,477 - -0.4
4,299,505 + -0.3
4,299,513 - -1.1
4,299,536 + HP15_4065 0.11 -0.5
4,299,564 - HP15_4065 0.14 -0.4
4,299,574 - HP15_4065 0.15 +0.4
4,299,584 - HP15_4065 0.16 +0.3
4,299,605 - HP15_4065 0.18 -0.1
4,299,633 + HP15_4065 0.21 +1.4
4,299,633 + HP15_4065 0.21 -0.4
4,299,633 + HP15_4065 0.21 +0.9
4,299,633 + HP15_4065 0.21 -0.7
4,299,641 + HP15_4065 0.22 -1.1
4,299,641 - HP15_4065 0.22 +0.8
4,299,641 - HP15_4065 0.22 -0.6
4,299,803 + HP15_4065 0.37 -2.0
4,299,859 + HP15_4065 0.42 +0.1
4,299,947 + HP15_4065 0.51 -0.3
4,299,949 - HP15_4065 0.51 -1.1
4,300,076 - HP15_4065 0.63 -2.1
4,300,237 - HP15_4065 0.79 -0.7
4,300,291 + HP15_4065 0.84 +0.3
4,300,370 + -0.9
4,300,373 - -0.1

Or see this region's nucleotide sequence