Experiment: m.b. Aluminum chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3969 and HP15_3970 overlap by 17 nucleotides HP15_3970 and HP15_3971 are separated by 4 nucleotides HP15_3971 and HP15_3972 are separated by 308 nucleotides
HP15_3969: HP15_3969 - glycosyl transferase, family 39, at 4,198,405 to 4,199,952
_3969
HP15_3970: HP15_3970 - glycosyl transferase, group 2 family protein, at 4,199,936 to 4,200,910
_3970
HP15_3971: HP15_3971 - GtrA family protein, at 4,200,915 to 4,201,289
_3971
HP15_3972: HP15_3972 - conserved hypothetical protein, at 4,201,598 to 4,202,257
_3972
Position (kb)
4199
4200
4201 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 4198.977 kb on + strand, within HP15_3969 at 4199.004 kb on - strand, within HP15_3969 at 4199.132 kb on - strand, within HP15_3969 at 4199.153 kb on - strand, within HP15_3969 at 4199.246 kb on + strand, within HP15_3969 at 4199.246 kb on + strand, within HP15_3969 at 4199.274 kb on - strand, within HP15_3969 at 4199.393 kb on - strand, within HP15_3969 at 4199.400 kb on + strand, within HP15_3969 at 4199.410 kb on - strand, within HP15_3969 at 4199.454 kb on + strand, within HP15_3969 at 4199.462 kb on - strand, within HP15_3969 at 4199.478 kb on + strand, within HP15_3969 at 4199.478 kb on + strand, within HP15_3969 at 4199.486 kb on - strand, within HP15_3969 at 4199.486 kb on - strand, within HP15_3969 at 4199.488 kb on + strand, within HP15_3969 at 4199.488 kb on + strand, within HP15_3969 at 4199.499 kb on + strand, within HP15_3969 at 4199.499 kb on + strand, within HP15_3969 at 4199.554 kb on + strand, within HP15_3969 at 4199.554 kb on + strand, within HP15_3969 at 4199.554 kb on + strand, within HP15_3969 at 4199.562 kb on - strand, within HP15_3969 at 4199.562 kb on - strand, within HP15_3969 at 4199.562 kb on - strand, within HP15_3969 at 4199.652 kb on + strand, within HP15_3969 at 4199.732 kb on + strand, within HP15_3969 at 4199.760 kb on - strand, within HP15_3969 at 4199.799 kb on + strand at 4199.853 kb on + strand at 4199.888 kb on + strand at 4199.888 kb on + strand at 4200.050 kb on - strand, within HP15_3970 at 4200.102 kb on - strand, within HP15_3970 at 4200.128 kb on + strand, within HP15_3970 at 4200.229 kb on - strand, within HP15_3970 at 4200.418 kb on + strand, within HP15_3970 at 4200.426 kb on - strand, within HP15_3970 at 4200.426 kb on - strand, within HP15_3970 at 4200.426 kb on - strand, within HP15_3970 at 4200.428 kb on + strand, within HP15_3970 at 4200.450 kb on - strand, within HP15_3970 at 4200.533 kb on + strand, within HP15_3970 at 4200.584 kb on - strand, within HP15_3970 at 4200.621 kb on - strand, within HP15_3970 at 4200.623 kb on + strand, within HP15_3970 at 4200.641 kb on + strand, within HP15_3970 at 4200.677 kb on - strand, within HP15_3970 at 4200.677 kb on - strand, within HP15_3970 at 4200.774 kb on - strand, within HP15_3970 at 4200.865 kb on + strand at 4200.915 kb on - strand at 4200.917 kb on + strand at 4201.221 kb on + strand, within HP15_3971 at 4201.272 kb on - strand at 4201.402 kb on + strand at 4201.526 kb on + strand at 4201.531 kb on + strand at 4201.534 kb on - strand at 4201.534 kb on - strand at 4201.549 kb on - strand at 4201.629 kb on + strand at 4201.634 kb on + strand at 4201.637 kb on - strand at 4201.757 kb on + strand, within HP15_3972 at 4201.765 kb on - strand, within HP15_3972 at 4201.787 kb on + strand, within HP15_3972
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM remove 4,198,977 + HP15_3969 0.37 -4.0 4,199,004 - HP15_3969 0.39 -2.3 4,199,132 - HP15_3969 0.47 -2.9 4,199,153 - HP15_3969 0.48 -4.0 4,199,246 + HP15_3969 0.54 -1.8 4,199,246 + HP15_3969 0.54 -2.6 4,199,274 - HP15_3969 0.56 -3.8 4,199,393 - HP15_3969 0.64 -2.6 4,199,400 + HP15_3969 0.64 -5.5 4,199,410 - HP15_3969 0.65 -1.8 4,199,454 + HP15_3969 0.68 -3.1 4,199,462 - HP15_3969 0.68 -4.5 4,199,478 + HP15_3969 0.69 -3.8 4,199,478 + HP15_3969 0.69 -3.5 4,199,486 - HP15_3969 0.70 -1.7 4,199,486 - HP15_3969 0.70 -3.9 4,199,488 + HP15_3969 0.70 -1.3 4,199,488 + HP15_3969 0.70 -4.2 4,199,499 + HP15_3969 0.71 -3.1 4,199,499 + HP15_3969 0.71 -3.8 4,199,554 + HP15_3969 0.74 -3.2 4,199,554 + HP15_3969 0.74 -1.5 4,199,554 + HP15_3969 0.74 -3.9 4,199,562 - HP15_3969 0.75 -3.8 4,199,562 - HP15_3969 0.75 -5.0 4,199,562 - HP15_3969 0.75 -4.2 4,199,652 + HP15_3969 0.81 -2.9 4,199,732 + HP15_3969 0.86 -2.1 4,199,760 - HP15_3969 0.88 -2.2 4,199,799 + -4.4 4,199,853 + -3.8 4,199,888 + -3.9 4,199,888 + -2.6 4,200,050 - HP15_3970 0.12 -5.6 4,200,102 - HP15_3970 0.17 -4.1 4,200,128 + HP15_3970 0.20 -1.7 4,200,229 - HP15_3970 0.30 -3.4 4,200,418 + HP15_3970 0.49 -3.5 4,200,426 - HP15_3970 0.50 -1.5 4,200,426 - HP15_3970 0.50 -3.1 4,200,426 - HP15_3970 0.50 -2.3 4,200,428 + HP15_3970 0.50 -3.8 4,200,450 - HP15_3970 0.53 -3.3 4,200,533 + HP15_3970 0.61 -3.3 4,200,584 - HP15_3970 0.66 -3.9 4,200,621 - HP15_3970 0.70 -4.4 4,200,623 + HP15_3970 0.70 -1.3 4,200,641 + HP15_3970 0.72 -2.8 4,200,677 - HP15_3970 0.76 -2.4 4,200,677 - HP15_3970 0.76 -0.9 4,200,774 - HP15_3970 0.86 -2.4 4,200,865 + -3.9 4,200,915 - -3.7 4,200,917 + -0.5 4,201,221 + HP15_3971 0.82 -4.2 4,201,272 - -3.9 4,201,402 + -3.8 4,201,526 + -1.5 4,201,531 + -4.0 4,201,534 - +4.3 4,201,534 - +4.0 4,201,549 - +3.9 4,201,629 + +2.1 4,201,634 + +1.4 4,201,637 - +3.8 4,201,757 + HP15_3972 0.24 +0.5 4,201,765 - HP15_3972 0.25 +4.0 4,201,787 + HP15_3972 0.29 +1.5
Or see this region's nucleotide sequence