Strain Fitness in Marinobacter adhaerens HP15 around HP15_3967

Experiment: m.b. Aluminum chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3965 and HP15_3966 are separated by 1 nucleotidesHP15_3966 and HP15_3967 are separated by 93 nucleotidesHP15_3967 and HP15_3968 overlap by 4 nucleotidesHP15_3968 and HP15_3969 are separated by 31 nucleotides HP15_3965: HP15_3965 - membrane protein containing SNARE associated Golgi protein domain, at 4,194,759 to 4,195,427 _3965 HP15_3966: HP15_3966 - glycosyl transferase, group 2 family protein, at 4,195,429 to 4,196,196 _3966 HP15_3967: HP15_3967 - integral membrane sensor signal transduction histidine kinase, at 4,196,290 to 4,197,702 _3967 HP15_3968: HP15_3968 - two component transcriptional regulator, winged helix family, at 4,197,699 to 4,198,373 _3968 HP15_3969: HP15_3969 - glycosyl transferase, family 39, at 4,198,405 to 4,199,952 _3969 Position (kb) 4196 4197 4198Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4at 4195.298 kb on + strand, within HP15_3965at 4195.346 kb on + strand, within HP15_3965at 4195.435 kb on - strandat 4195.470 kb on - strandat 4195.485 kb on - strandat 4195.485 kb on - strandat 4195.498 kb on + strandat 4195.554 kb on - strand, within HP15_3966at 4195.583 kb on - strand, within HP15_3966at 4195.861 kb on - strand, within HP15_3966at 4195.938 kb on - strand, within HP15_3966at 4195.961 kb on + strand, within HP15_3966at 4196.005 kb on - strand, within HP15_3966at 4196.017 kb on + strand, within HP15_3966at 4196.025 kb on - strand, within HP15_3966at 4196.090 kb on - strand, within HP15_3966at 4196.090 kb on - strand, within HP15_3966at 4196.117 kb on + strand, within HP15_3966at 4196.193 kb on - strandat 4196.346 kb on + strandat 4196.346 kb on + strandat 4196.346 kb on + strandat 4196.376 kb on + strandat 4196.413 kb on + strandat 4196.425 kb on + strandat 4196.515 kb on - strand, within HP15_3967at 4196.528 kb on + strand, within HP15_3967at 4196.536 kb on - strand, within HP15_3967at 4196.536 kb on - strand, within HP15_3967at 4196.552 kb on + strand, within HP15_3967at 4196.560 kb on - strand, within HP15_3967at 4196.580 kb on + strand, within HP15_3967at 4196.585 kb on + strand, within HP15_3967at 4196.590 kb on + strand, within HP15_3967at 4196.598 kb on - strand, within HP15_3967at 4196.640 kb on - strand, within HP15_3967at 4196.664 kb on + strand, within HP15_3967at 4196.731 kb on + strand, within HP15_3967at 4196.739 kb on - strand, within HP15_3967at 4196.865 kb on + strand, within HP15_3967at 4196.868 kb on - strand, within HP15_3967at 4196.917 kb on - strand, within HP15_3967at 4197.018 kb on - strand, within HP15_3967at 4197.044 kb on - strand, within HP15_3967at 4197.140 kb on + strand, within HP15_3967at 4197.140 kb on + strand, within HP15_3967at 4197.172 kb on + strand, within HP15_3967at 4197.270 kb on + strand, within HP15_3967at 4197.272 kb on - strand, within HP15_3967at 4197.278 kb on - strand, within HP15_3967at 4197.399 kb on + strand, within HP15_3967at 4197.455 kb on - strand, within HP15_3967at 4197.470 kb on - strand, within HP15_3967at 4197.474 kb on - strand, within HP15_3967at 4197.506 kb on - strand, within HP15_3967at 4197.545 kb on + strand, within HP15_3967at 4197.552 kb on - strand, within HP15_3967at 4197.555 kb on + strand, within HP15_3967at 4197.574 kb on + strandat 4197.716 kb on + strandat 4197.724 kb on + strandat 4197.809 kb on + strand, within HP15_3968at 4197.809 kb on + strand, within HP15_3968at 4197.809 kb on + strand, within HP15_3968at 4197.817 kb on - strand, within HP15_3968at 4197.817 kb on - strand, within HP15_3968at 4197.817 kb on - strand, within HP15_3968at 4197.823 kb on - strand, within HP15_3968at 4197.844 kb on - strand, within HP15_3968at 4197.852 kb on - strand, within HP15_3968at 4197.884 kb on + strand, within HP15_3968at 4197.901 kb on + strand, within HP15_3968at 4197.998 kb on + strand, within HP15_3968at 4198.006 kb on - strand, within HP15_3968at 4198.114 kb on - strand, within HP15_3968at 4198.226 kb on - strand, within HP15_3968at 4198.257 kb on + strand, within HP15_3968at 4198.281 kb on - strand, within HP15_3968at 4198.316 kb on - strandat 4198.347 kb on - strandat 4198.567 kb on - strand, within HP15_3969at 4198.608 kb on + strand, within HP15_3969at 4198.701 kb on - strand, within HP15_3969

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM
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4,195,298 + HP15_3965 0.81 -6.0
4,195,346 + HP15_3965 0.88 -4.0
4,195,435 - -2.1
4,195,470 - -3.1
4,195,485 - -3.9
4,195,485 - -4.5
4,195,498 + -4.8
4,195,554 - HP15_3966 0.16 -3.4
4,195,583 - HP15_3966 0.20 -3.9
4,195,861 - HP15_3966 0.56 -2.9
4,195,938 - HP15_3966 0.66 -1.9
4,195,961 + HP15_3966 0.69 -3.1
4,196,005 - HP15_3966 0.75 -3.5
4,196,017 + HP15_3966 0.77 -5.0
4,196,025 - HP15_3966 0.78 -5.0
4,196,090 - HP15_3966 0.86 -2.9
4,196,090 - HP15_3966 0.86 -3.6
4,196,117 + HP15_3966 0.90 -5.1
4,196,193 - -1.6
4,196,346 + +2.1
4,196,346 + +0.9
4,196,346 + +0.4
4,196,376 + +0.8
4,196,413 + +1.4
4,196,425 + +1.3
4,196,515 - HP15_3967 0.16 +1.7
4,196,528 + HP15_3967 0.17 +1.1
4,196,536 - HP15_3967 0.17 +1.2
4,196,536 - HP15_3967 0.17 -3.3
4,196,552 + HP15_3967 0.19 +0.2
4,196,560 - HP15_3967 0.19 +1.4
4,196,580 + HP15_3967 0.21 +1.8
4,196,585 + HP15_3967 0.21 +2.2
4,196,590 + HP15_3967 0.21 -0.5
4,196,598 - HP15_3967 0.22 +2.0
4,196,640 - HP15_3967 0.25 +1.1
4,196,664 + HP15_3967 0.26 +0.2
4,196,731 + HP15_3967 0.31 +1.4
4,196,739 - HP15_3967 0.32 +2.9
4,196,865 + HP15_3967 0.41 +1.8
4,196,868 - HP15_3967 0.41 +4.2
4,196,917 - HP15_3967 0.44 +0.2
4,197,018 - HP15_3967 0.52 -0.9
4,197,044 - HP15_3967 0.53 +1.5
4,197,140 + HP15_3967 0.60 +0.7
4,197,140 + HP15_3967 0.60 +0.4
4,197,172 + HP15_3967 0.62 +0.9
4,197,270 + HP15_3967 0.69 +1.5
4,197,272 - HP15_3967 0.69 -0.9
4,197,278 - HP15_3967 0.70 -1.4
4,197,399 + HP15_3967 0.78 -3.1
4,197,455 - HP15_3967 0.82 -1.2
4,197,470 - HP15_3967 0.84 -4.0
4,197,474 - HP15_3967 0.84 -1.3
4,197,506 - HP15_3967 0.86 -1.7
4,197,545 + HP15_3967 0.89 -1.5
4,197,552 - HP15_3967 0.89 -2.1
4,197,555 + HP15_3967 0.90 -2.8
4,197,574 + -0.5
4,197,716 + -4.1
4,197,724 + -4.3
4,197,809 + HP15_3968 0.16 -4.3
4,197,809 + HP15_3968 0.16 -2.3
4,197,809 + HP15_3968 0.16 -2.4
4,197,817 - HP15_3968 0.17 -4.7
4,197,817 - HP15_3968 0.17 -3.0
4,197,817 - HP15_3968 0.17 -4.9
4,197,823 - HP15_3968 0.18 -5.3
4,197,844 - HP15_3968 0.21 -3.5
4,197,852 - HP15_3968 0.23 -4.0
4,197,884 + HP15_3968 0.27 -4.8
4,197,901 + HP15_3968 0.30 -3.6
4,197,998 + HP15_3968 0.44 -3.4
4,198,006 - HP15_3968 0.45 -3.3
4,198,114 - HP15_3968 0.61 -4.4
4,198,226 - HP15_3968 0.78 -4.8
4,198,257 + HP15_3968 0.83 -2.9
4,198,281 - HP15_3968 0.86 -2.5
4,198,316 - -3.9
4,198,347 - -4.3
4,198,567 - HP15_3969 0.10 -4.6
4,198,608 + HP15_3969 0.13 -4.5
4,198,701 - HP15_3969 0.19 -4.4

Or see this region's nucleotide sequence