Strain Fitness in Marinobacter adhaerens HP15 around HP15_3964

Experiment: m.b. Aluminum chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3962 and HP15_3963 are separated by 6 nucleotidesHP15_3963 and HP15_3964 are separated by 33 nucleotidesHP15_3964 and HP15_3965 are separated by 9 nucleotidesHP15_3965 and HP15_3966 are separated by 1 nucleotides HP15_3962: HP15_3962 - two-component system sensor histidine kinase, at 4,191,312 to 4,192,730 _3962 HP15_3963: HP15_3963 - conserved hypothetical protein, at 4,192,737 to 4,192,967 _3963 HP15_3964: HP15_3964 - glycosyl transferase, family 39, at 4,193,001 to 4,194,749 _3964 HP15_3965: HP15_3965 - membrane protein containing SNARE associated Golgi protein domain, at 4,194,759 to 4,195,427 _3965 HP15_3966: HP15_3966 - glycosyl transferase, group 2 family protein, at 4,195,429 to 4,196,196 _3966 Position (kb) 4193 4194 4195Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 4192.194 kb on + strand, within HP15_3962at 4192.231 kb on - strand, within HP15_3962at 4192.263 kb on - strand, within HP15_3962at 4192.279 kb on + strand, within HP15_3962at 4192.279 kb on + strand, within HP15_3962at 4192.322 kb on - strand, within HP15_3962at 4192.328 kb on + strand, within HP15_3962at 4192.364 kb on - strand, within HP15_3962at 4192.422 kb on - strand, within HP15_3962at 4192.606 kb on + strandat 4192.611 kb on + strandat 4192.654 kb on - strandat 4192.694 kb on - strandat 4192.732 kb on - strandat 4193.021 kb on + strandat 4193.026 kb on + strandat 4193.038 kb on + strandat 4193.068 kb on + strandat 4193.111 kb on - strandat 4193.159 kb on - strandat 4193.291 kb on + strand, within HP15_3964at 4193.316 kb on - strand, within HP15_3964at 4193.450 kb on + strand, within HP15_3964at 4193.495 kb on + strand, within HP15_3964at 4193.540 kb on + strand, within HP15_3964at 4193.545 kb on + strand, within HP15_3964at 4193.572 kb on + strand, within HP15_3964at 4193.573 kb on + strand, within HP15_3964at 4193.580 kb on - strand, within HP15_3964at 4193.580 kb on - strand, within HP15_3964at 4193.587 kb on + strand, within HP15_3964at 4193.634 kb on + strand, within HP15_3964at 4193.641 kb on + strand, within HP15_3964at 4193.649 kb on - strand, within HP15_3964at 4193.738 kb on - strand, within HP15_3964at 4193.740 kb on - strand, within HP15_3964at 4193.755 kb on - strand, within HP15_3964at 4193.783 kb on - strand, within HP15_3964at 4193.827 kb on + strand, within HP15_3964at 4193.827 kb on + strand, within HP15_3964at 4193.929 kb on - strand, within HP15_3964at 4193.959 kb on + strand, within HP15_3964at 4193.988 kb on - strand, within HP15_3964at 4194.038 kb on + strand, within HP15_3964at 4194.281 kb on + strand, within HP15_3964at 4194.409 kb on - strand, within HP15_3964at 4194.439 kb on + strand, within HP15_3964at 4194.497 kb on - strand, within HP15_3964at 4194.535 kb on + strand, within HP15_3964at 4194.571 kb on - strand, within HP15_3964at 4194.701 kb on + strandat 4194.720 kb on - strandat 4194.745 kb on + strandat 4194.753 kb on - strandat 4194.756 kb on + strandat 4194.756 kb on + strandat 4195.039 kb on + strand, within HP15_3965at 4195.039 kb on - strand, within HP15_3965at 4195.105 kb on - strand, within HP15_3965at 4195.112 kb on - strand, within HP15_3965at 4195.283 kb on + strand, within HP15_3965at 4195.298 kb on + strand, within HP15_3965at 4195.346 kb on + strand, within HP15_3965at 4195.435 kb on - strandat 4195.470 kb on - strandat 4195.485 kb on - strandat 4195.485 kb on - strandat 4195.498 kb on + strandat 4195.554 kb on - strand, within HP15_3966at 4195.583 kb on - strand, within HP15_3966

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM
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4,192,194 + HP15_3962 0.62 -1.3
4,192,231 - HP15_3962 0.65 -2.7
4,192,263 - HP15_3962 0.67 -1.2
4,192,279 + HP15_3962 0.68 -0.3
4,192,279 + HP15_3962 0.68 +0.2
4,192,322 - HP15_3962 0.71 -2.7
4,192,328 + HP15_3962 0.72 -0.9
4,192,364 - HP15_3962 0.74 +0.5
4,192,422 - HP15_3962 0.78 -0.8
4,192,606 + -0.8
4,192,611 + -1.9
4,192,654 - -1.4
4,192,694 - -1.4
4,192,732 - +0.0
4,193,021 + -1.3
4,193,026 + -1.6
4,193,038 + -4.6
4,193,068 + -5.0
4,193,111 - -1.6
4,193,159 - -2.9
4,193,291 + HP15_3964 0.17 -1.7
4,193,316 - HP15_3964 0.18 -4.5
4,193,450 + HP15_3964 0.26 -0.7
4,193,495 + HP15_3964 0.28 -3.7
4,193,540 + HP15_3964 0.31 -2.9
4,193,545 + HP15_3964 0.31 -4.0
4,193,572 + HP15_3964 0.33 -5.4
4,193,573 + HP15_3964 0.33 -1.7
4,193,580 - HP15_3964 0.33 +0.5
4,193,580 - HP15_3964 0.33 -4.6
4,193,587 + HP15_3964 0.34 -3.1
4,193,634 + HP15_3964 0.36 -4.9
4,193,641 + HP15_3964 0.37 -2.9
4,193,649 - HP15_3964 0.37 -3.4
4,193,738 - HP15_3964 0.42 -1.5
4,193,740 - HP15_3964 0.42 -3.9
4,193,755 - HP15_3964 0.43 -2.4
4,193,783 - HP15_3964 0.45 -6.2
4,193,827 + HP15_3964 0.47 -0.5
4,193,827 + HP15_3964 0.47 -3.1
4,193,929 - HP15_3964 0.53 -2.1
4,193,959 + HP15_3964 0.55 -4.4
4,193,988 - HP15_3964 0.56 -2.4
4,194,038 + HP15_3964 0.59 -2.1
4,194,281 + HP15_3964 0.73 -2.9
4,194,409 - HP15_3964 0.81 -4.7
4,194,439 + HP15_3964 0.82 -3.8
4,194,497 - HP15_3964 0.86 -3.4
4,194,535 + HP15_3964 0.88 -2.8
4,194,571 - HP15_3964 0.90 -6.4
4,194,701 + -3.7
4,194,720 - -4.0
4,194,745 + -3.3
4,194,753 - -3.1
4,194,756 + -5.0
4,194,756 + -3.2
4,195,039 + HP15_3965 0.42 -4.6
4,195,039 - HP15_3965 0.42 -5.9
4,195,105 - HP15_3965 0.52 -1.6
4,195,112 - HP15_3965 0.53 -2.6
4,195,283 + HP15_3965 0.78 -4.5
4,195,298 + HP15_3965 0.81 -6.0
4,195,346 + HP15_3965 0.88 -4.0
4,195,435 - -2.1
4,195,470 - -3.1
4,195,485 - -3.9
4,195,485 - -4.5
4,195,498 + -4.8
4,195,554 - HP15_3966 0.16 -3.4
4,195,583 - HP15_3966 0.20 -3.9

Or see this region's nucleotide sequence