Strain Fitness in Marinobacter adhaerens HP15 around HP15_3938

Experiment: m.b. Aluminum chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3937 and HP15_3938 are separated by 22 nucleotidesHP15_3938 and HP15_3939 are separated by 36 nucleotidesHP15_3939 and HP15_3940 are separated by 51 nucleotides HP15_3937: HP15_3937 - conserved hypothetical protein, membrane, at 4,166,349 to 4,167,713 _3937 HP15_3938: HP15_3938 - D-isomer specific 2-hydroxyacid dehydrogenase family protein, at 4,167,736 to 4,168,665 _3938 HP15_3939: HP15_3939 - hypothetical protein, at 4,168,702 to 4,168,890 _3939 HP15_3940: HP15_3940 - transcriptional regulator, IclR family protein, at 4,168,942 to 4,169,766 _3940 Position (kb) 4167 4168 4169Strain fitness (log2 ratio) -1 0 1at 4166.737 kb on - strand, within HP15_3937at 4166.794 kb on + strand, within HP15_3937at 4166.861 kb on - strand, within HP15_3937at 4166.861 kb on - strand, within HP15_3937at 4166.883 kb on - strand, within HP15_3937at 4167.038 kb on + strand, within HP15_3937at 4167.046 kb on - strand, within HP15_3937at 4167.082 kb on + strand, within HP15_3937at 4167.148 kb on + strand, within HP15_3937at 4167.156 kb on - strand, within HP15_3937at 4167.176 kb on - strand, within HP15_3937at 4167.205 kb on - strand, within HP15_3937at 4167.257 kb on + strand, within HP15_3937at 4167.257 kb on + strand, within HP15_3937at 4167.257 kb on + strand, within HP15_3937at 4167.257 kb on + strand, within HP15_3937at 4167.257 kb on + strand, within HP15_3937at 4167.257 kb on + strand, within HP15_3937at 4167.265 kb on - strand, within HP15_3937at 4167.265 kb on - strand, within HP15_3937at 4167.265 kb on - strand, within HP15_3937at 4167.265 kb on - strand, within HP15_3937at 4167.265 kb on - strand, within HP15_3937at 4167.265 kb on - strand, within HP15_3937at 4167.265 kb on - strand, within HP15_3937at 4167.310 kb on + strand, within HP15_3937at 4167.552 kb on + strand, within HP15_3937at 4167.592 kb on - strandat 4167.702 kb on + strandat 4167.702 kb on + strandat 4167.702 kb on + strandat 4167.702 kb on + strandat 4167.702 kb on + strandat 4167.710 kb on - strandat 4167.710 kb on - strandat 4167.717 kb on + strandat 4167.722 kb on + strandat 4167.737 kb on - strandat 4167.737 kb on - strandat 4167.783 kb on + strandat 4167.786 kb on - strandat 4167.853 kb on - strand, within HP15_3938at 4167.996 kb on + strand, within HP15_3938at 4168.006 kb on + strand, within HP15_3938at 4168.044 kb on - strand, within HP15_3938at 4168.085 kb on + strand, within HP15_3938at 4168.162 kb on + strand, within HP15_3938at 4168.302 kb on + strand, within HP15_3938at 4168.322 kb on + strand, within HP15_3938at 4168.354 kb on - strand, within HP15_3938at 4168.538 kb on + strand, within HP15_3938at 4168.614 kb on + strandat 4168.617 kb on + strandat 4168.619 kb on + strandat 4168.622 kb on - strandat 4168.631 kb on + strandat 4168.717 kb on + strandat 4169.056 kb on - strand, within HP15_3940at 4169.149 kb on + strand, within HP15_3940at 4169.157 kb on - strand, within HP15_3940at 4169.158 kb on - strand, within HP15_3940at 4169.158 kb on - strand, within HP15_3940at 4169.240 kb on - strand, within HP15_3940at 4169.271 kb on + strand, within HP15_3940at 4169.285 kb on - strand, within HP15_3940at 4169.413 kb on - strand, within HP15_3940at 4169.536 kb on + strand, within HP15_3940at 4169.547 kb on + strand, within HP15_3940at 4169.581 kb on - strand, within HP15_3940at 4169.591 kb on - strand, within HP15_3940at 4169.656 kb on + strand, within HP15_3940at 4169.656 kb on + strand, within HP15_3940at 4169.661 kb on + strand, within HP15_3940at 4169.664 kb on - strand, within HP15_3940at 4169.664 kb on - strand, within HP15_3940

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM
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4,166,737 - HP15_3937 0.28 +0.2
4,166,794 + HP15_3937 0.33 +0.4
4,166,861 - HP15_3937 0.38 -0.1
4,166,861 - HP15_3937 0.38 +0.1
4,166,883 - HP15_3937 0.39 +1.5
4,167,038 + HP15_3937 0.50 -0.0
4,167,046 - HP15_3937 0.51 +0.2
4,167,082 + HP15_3937 0.54 -0.0
4,167,148 + HP15_3937 0.59 -0.2
4,167,156 - HP15_3937 0.59 +0.5
4,167,176 - HP15_3937 0.61 -0.1
4,167,205 - HP15_3937 0.63 +0.3
4,167,257 + HP15_3937 0.67 +0.2
4,167,257 + HP15_3937 0.67 +0.6
4,167,257 + HP15_3937 0.67 +0.6
4,167,257 + HP15_3937 0.67 -0.8
4,167,257 + HP15_3937 0.67 -0.7
4,167,257 + HP15_3937 0.67 +0.6
4,167,265 - HP15_3937 0.67 +0.5
4,167,265 - HP15_3937 0.67 +0.7
4,167,265 - HP15_3937 0.67 +0.1
4,167,265 - HP15_3937 0.67 +0.5
4,167,265 - HP15_3937 0.67 -0.5
4,167,265 - HP15_3937 0.67 -0.1
4,167,265 - HP15_3937 0.67 -0.2
4,167,310 + HP15_3937 0.70 +0.2
4,167,552 + HP15_3937 0.88 +0.2
4,167,592 - +0.4
4,167,702 + -0.7
4,167,702 + -0.6
4,167,702 + +1.7
4,167,702 + -0.1
4,167,702 + +0.1
4,167,710 - +0.7
4,167,710 - -0.1
4,167,717 + +0.1
4,167,722 + -0.2
4,167,737 - +0.1
4,167,737 - -0.2
4,167,783 + +0.7
4,167,786 - +0.2
4,167,853 - HP15_3938 0.13 -0.5
4,167,996 + HP15_3938 0.28 +0.1
4,168,006 + HP15_3938 0.29 -0.8
4,168,044 - HP15_3938 0.33 -0.2
4,168,085 + HP15_3938 0.38 +0.4
4,168,162 + HP15_3938 0.46 -0.8
4,168,302 + HP15_3938 0.61 -0.9
4,168,322 + HP15_3938 0.63 -0.4
4,168,354 - HP15_3938 0.66 -0.3
4,168,538 + HP15_3938 0.86 -0.1
4,168,614 + -0.0
4,168,617 + +0.4
4,168,619 + -0.2
4,168,622 - -0.3
4,168,631 + -0.2
4,168,717 + +0.1
4,169,056 - HP15_3940 0.14 -1.0
4,169,149 + HP15_3940 0.25 +0.1
4,169,157 - HP15_3940 0.26 -0.5
4,169,158 - HP15_3940 0.26 -1.1
4,169,158 - HP15_3940 0.26 +0.3
4,169,240 - HP15_3940 0.36 -0.8
4,169,271 + HP15_3940 0.40 +0.0
4,169,285 - HP15_3940 0.42 -0.2
4,169,413 - HP15_3940 0.57 +0.4
4,169,536 + HP15_3940 0.72 +0.3
4,169,547 + HP15_3940 0.73 -0.9
4,169,581 - HP15_3940 0.77 -0.1
4,169,591 - HP15_3940 0.79 -0.9
4,169,656 + HP15_3940 0.87 -1.3
4,169,656 + HP15_3940 0.87 -0.0
4,169,661 + HP15_3940 0.87 -0.0
4,169,664 - HP15_3940 0.88 -0.3
4,169,664 - HP15_3940 0.88 +0.8

Or see this region's nucleotide sequence