Experiment: m.b. Aluminum chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3905 and HP15_3906 are separated by 78 nucleotides HP15_3906 and HP15_3907 are separated by 122 nucleotides HP15_3907 and HP15_3908 are separated by 110 nucleotides HP15_3908 and HP15_3909 are separated by 29 nucleotides
HP15_3905: HP15_3905 - lipoprotein, YaeC family, at 4,134,602 to 4,135,384
_3905
HP15_3906: HP15_3906 - protein containing alkyl hydroperoxide reductase/ thiol specific antioxidant/ mal allergen / peroxiredoxin, C-terminal, at 4,135,463 to 4,136,116
_3906
HP15_3907: HP15_3907 - sodium/alanine symporter family protein, at 4,136,239 to 4,137,600
_3907
HP15_3908: HP15_3908 - CBS domain protein, at 4,137,711 to 4,138,214
_3908
HP15_3909: HP15_3909 - carboxylesterase, at 4,138,244 to 4,139,086
_3909
Position (kb)
4136
4137
4138 Strain fitness (log2 ratio)
-1
0
1 at 4135.247 kb on + strand, within HP15_3905 at 4135.362 kb on - strand at 4135.521 kb on + strand at 4135.521 kb on + strand at 4135.583 kb on + strand, within HP15_3906 at 4135.697 kb on - strand, within HP15_3906 at 4135.756 kb on + strand, within HP15_3906 at 4135.756 kb on + strand, within HP15_3906 at 4135.764 kb on - strand, within HP15_3906 at 4135.764 kb on - strand, within HP15_3906 at 4135.764 kb on - strand, within HP15_3906 at 4135.764 kb on - strand, within HP15_3906 at 4135.850 kb on + strand, within HP15_3906 at 4135.858 kb on - strand, within HP15_3906 at 4135.858 kb on - strand, within HP15_3906 at 4135.900 kb on + strand, within HP15_3906 at 4135.900 kb on + strand, within HP15_3906 at 4136.075 kb on - strand at 4136.126 kb on + strand at 4136.134 kb on - strand at 4136.139 kb on - strand at 4136.215 kb on - strand at 4136.245 kb on - strand at 4136.245 kb on - strand at 4136.245 kb on - strand at 4136.300 kb on - strand at 4136.300 kb on - strand at 4136.374 kb on + strand at 4136.474 kb on + strand, within HP15_3907 at 4136.482 kb on - strand, within HP15_3907 at 4136.488 kb on + strand, within HP15_3907 at 4136.488 kb on + strand, within HP15_3907 at 4136.529 kb on + strand, within HP15_3907 at 4136.578 kb on + strand, within HP15_3907 at 4136.586 kb on - strand, within HP15_3907 at 4136.586 kb on - strand, within HP15_3907 at 4136.792 kb on - strand, within HP15_3907 at 4136.808 kb on + strand, within HP15_3907 at 4136.918 kb on - strand, within HP15_3907 at 4136.970 kb on + strand, within HP15_3907 at 4136.978 kb on - strand, within HP15_3907 at 4136.997 kb on + strand, within HP15_3907 at 4137.095 kb on + strand, within HP15_3907 at 4137.212 kb on - strand, within HP15_3907 at 4137.250 kb on - strand, within HP15_3907 at 4137.270 kb on - strand, within HP15_3907 at 4137.391 kb on - strand, within HP15_3907 at 4137.545 kb on + strand at 4137.551 kb on + strand at 4137.551 kb on + strand at 4137.559 kb on - strand at 4137.616 kb on - strand at 4137.856 kb on - strand, within HP15_3908 at 4137.960 kb on + strand, within HP15_3908 at 4137.976 kb on + strand, within HP15_3908 at 4137.981 kb on - strand, within HP15_3908 at 4138.092 kb on - strand, within HP15_3908 at 4138.093 kb on - strand, within HP15_3908 at 4138.109 kb on - strand, within HP15_3908 at 4138.134 kb on - strand, within HP15_3908 at 4138.141 kb on + strand, within HP15_3908 at 4138.149 kb on - strand, within HP15_3908 at 4138.149 kb on - strand, within HP15_3908 at 4138.171 kb on + strand at 4138.209 kb on - strand at 4138.403 kb on + strand, within HP15_3909 at 4138.408 kb on + strand, within HP15_3909 at 4138.416 kb on - strand, within HP15_3909 at 4138.416 kb on - strand, within HP15_3909 at 4138.416 kb on - strand, within HP15_3909 at 4138.453 kb on - strand, within HP15_3909 at 4138.485 kb on + strand, within HP15_3909 at 4138.533 kb on - strand, within HP15_3909 at 4138.577 kb on + strand, within HP15_3909
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM remove 4,135,247 + HP15_3905 0.82 -1.4 4,135,362 - +0.4 4,135,521 + -0.1 4,135,521 + +0.3 4,135,583 + HP15_3906 0.18 +0.1 4,135,697 - HP15_3906 0.36 -1.0 4,135,756 + HP15_3906 0.45 +0.1 4,135,756 + HP15_3906 0.45 -0.4 4,135,764 - HP15_3906 0.46 +0.4 4,135,764 - HP15_3906 0.46 -0.1 4,135,764 - HP15_3906 0.46 +0.1 4,135,764 - HP15_3906 0.46 +0.5 4,135,850 + HP15_3906 0.59 +0.9 4,135,858 - HP15_3906 0.60 +1.0 4,135,858 - HP15_3906 0.60 +0.3 4,135,900 + HP15_3906 0.67 -0.3 4,135,900 + HP15_3906 0.67 -0.9 4,136,075 - +0.9 4,136,126 + +0.1 4,136,134 - +0.4 4,136,139 - +0.3 4,136,215 - +0.7 4,136,245 - +0.6 4,136,245 - +0.4 4,136,245 - -0.0 4,136,300 - -1.4 4,136,300 - +0.3 4,136,374 + +0.2 4,136,474 + HP15_3907 0.17 +0.4 4,136,482 - HP15_3907 0.18 +0.8 4,136,488 + HP15_3907 0.18 +0.6 4,136,488 + HP15_3907 0.18 +0.3 4,136,529 + HP15_3907 0.21 +1.5 4,136,578 + HP15_3907 0.25 -0.1 4,136,586 - HP15_3907 0.25 +0.3 4,136,586 - HP15_3907 0.25 +0.4 4,136,792 - HP15_3907 0.41 +0.3 4,136,808 + HP15_3907 0.42 +0.4 4,136,918 - HP15_3907 0.50 +0.4 4,136,970 + HP15_3907 0.54 -0.2 4,136,978 - HP15_3907 0.54 +0.3 4,136,997 + HP15_3907 0.56 -0.3 4,137,095 + HP15_3907 0.63 +0.5 4,137,212 - HP15_3907 0.71 +0.5 4,137,250 - HP15_3907 0.74 +0.3 4,137,270 - HP15_3907 0.76 +0.5 4,137,391 - HP15_3907 0.85 +0.6 4,137,545 + +0.8 4,137,551 + -0.2 4,137,551 + +0.1 4,137,559 - +0.7 4,137,616 - -0.6 4,137,856 - HP15_3908 0.29 -0.4 4,137,960 + HP15_3908 0.49 -0.2 4,137,976 + HP15_3908 0.53 -0.1 4,137,981 - HP15_3908 0.54 -1.5 4,138,092 - HP15_3908 0.76 -0.2 4,138,093 - HP15_3908 0.76 +1.1 4,138,109 - HP15_3908 0.79 -0.3 4,138,134 - HP15_3908 0.84 +0.7 4,138,141 + HP15_3908 0.85 -0.1 4,138,149 - HP15_3908 0.87 +1.1 4,138,149 - HP15_3908 0.87 -0.6 4,138,171 + -0.2 4,138,209 - -0.5 4,138,403 + HP15_3909 0.19 +0.3 4,138,408 + HP15_3909 0.19 +0.2 4,138,416 - HP15_3909 0.20 -0.6 4,138,416 - HP15_3909 0.20 -0.5 4,138,416 - HP15_3909 0.20 +0.8 4,138,453 - HP15_3909 0.25 -0.3 4,138,485 + HP15_3909 0.29 -0.0 4,138,533 - HP15_3909 0.34 +0.5 4,138,577 + HP15_3909 0.40 -0.7
Or see this region's nucleotide sequence