Strain Fitness in Marinobacter adhaerens HP15 around HP15_3742

Experiment: m.b. Aluminum chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3741 and HP15_3742 overlap by 4 nucleotidesHP15_3742 and HP15_3743 are separated by 22 nucleotides HP15_3741: HP15_3741 - potassium transporter peripheral membrane component, at 3,962,711 to 3,964,114 _3741 HP15_3742: HP15_3742 - Fmu, rRNA SAM-dependent methyltransferase, at 3,964,111 to 3,965,391 _3742 HP15_3743: HP15_3743 - methionyl-tRNA formyltransferase, at 3,965,414 to 3,966,349 _3743 Position (kb) 3964 3965 3966Strain fitness (log2 ratio) -1 0 1 2at 3964.126 kb on + strandat 3964.134 kb on - strandat 3964.136 kb on + strandat 3964.149 kb on + strandat 3964.167 kb on - strandat 3964.497 kb on - strand, within HP15_3742at 3964.624 kb on + strand, within HP15_3742at 3964.688 kb on - strand, within HP15_3742at 3964.721 kb on + strand, within HP15_3742at 3964.721 kb on + strand, within HP15_3742at 3964.721 kb on + strand, within HP15_3742at 3964.725 kb on + strand, within HP15_3742at 3964.729 kb on - strand, within HP15_3742at 3964.906 kb on + strand, within HP15_3742at 3965.050 kb on - strand, within HP15_3742at 3965.054 kb on + strand, within HP15_3742at 3965.068 kb on + strand, within HP15_3742at 3965.160 kb on + strand, within HP15_3742at 3965.168 kb on + strand, within HP15_3742at 3965.252 kb on - strand, within HP15_3742at 3965.430 kb on - strandat 3966.359 kb on - strandat 3966.361 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM
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3,964,126 + +0.3
3,964,134 - +1.3
3,964,136 + +0.8
3,964,149 + -0.0
3,964,167 - +1.2
3,964,497 - HP15_3742 0.30 +1.9
3,964,624 + HP15_3742 0.40 +0.5
3,964,688 - HP15_3742 0.45 +1.7
3,964,721 + HP15_3742 0.48 +0.1
3,964,721 + HP15_3742 0.48 +1.9
3,964,721 + HP15_3742 0.48 +0.8
3,964,725 + HP15_3742 0.48 +1.2
3,964,729 - HP15_3742 0.48 +0.7
3,964,906 + HP15_3742 0.62 +0.5
3,965,050 - HP15_3742 0.73 +0.6
3,965,054 + HP15_3742 0.74 +1.8
3,965,068 + HP15_3742 0.75 +1.3
3,965,160 + HP15_3742 0.82 +1.5
3,965,168 + HP15_3742 0.83 +1.2
3,965,252 - HP15_3742 0.89 +1.0
3,965,430 - +1.0
3,966,359 - +0.0
3,966,361 - -0.8

Or see this region's nucleotide sequence