Strain Fitness in Marinobacter adhaerens HP15 around HP15_3704

Experiment: m.b. Aluminum chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3703 and HP15_3704 are separated by 6 nucleotidesHP15_3704 and HP15_3705 are separated by 128 nucleotides HP15_3703: HP15_3703 - DNA polymerase III, beta chain, at 3,907,506 to 3,908,609 _3703 HP15_3704: HP15_3704 - ABC1 family protein kinase-like protein, at 3,908,616 to 3,909,896 _3704 HP15_3705: HP15_3705 - DNA replication and repair protein recF, at 3,910,025 to 3,911,152 _3705 Position (kb) 3908 3909 3910Strain fitness (log2 ratio) -1 0 1at 3908.629 kb on + strandat 3908.662 kb on + strandat 3908.733 kb on - strandat 3908.760 kb on - strand, within HP15_3704at 3908.830 kb on + strand, within HP15_3704at 3908.873 kb on + strand, within HP15_3704at 3908.907 kb on + strand, within HP15_3704at 3908.965 kb on - strand, within HP15_3704at 3908.981 kb on + strand, within HP15_3704at 3908.989 kb on - strand, within HP15_3704at 3909.073 kb on + strand, within HP15_3704at 3909.210 kb on - strand, within HP15_3704at 3909.210 kb on - strand, within HP15_3704at 3909.210 kb on - strand, within HP15_3704at 3909.316 kb on + strand, within HP15_3704at 3909.320 kb on + strand, within HP15_3704at 3909.418 kb on - strand, within HP15_3704at 3909.876 kb on + strandat 3909.878 kb on + strandat 3909.935 kb on - strandat 3910.183 kb on + strand, within HP15_3705at 3910.191 kb on + strand, within HP15_3705at 3910.345 kb on + strand, within HP15_3705at 3910.410 kb on + strand, within HP15_3705at 3910.574 kb on + strand, within HP15_3705at 3910.806 kb on + strand, within HP15_3705

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM
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3,908,629 + -0.0
3,908,662 + +0.5
3,908,733 - +0.3
3,908,760 - HP15_3704 0.11 +0.1
3,908,830 + HP15_3704 0.17 -0.0
3,908,873 + HP15_3704 0.20 +0.5
3,908,907 + HP15_3704 0.23 -0.2
3,908,965 - HP15_3704 0.27 +0.7
3,908,981 + HP15_3704 0.28 -0.2
3,908,989 - HP15_3704 0.29 -0.5
3,909,073 + HP15_3704 0.36 +0.0
3,909,210 - HP15_3704 0.46 +1.4
3,909,210 - HP15_3704 0.46 +0.5
3,909,210 - HP15_3704 0.46 -0.1
3,909,316 + HP15_3704 0.55 +0.1
3,909,320 + HP15_3704 0.55 +0.6
3,909,418 - HP15_3704 0.63 -0.1
3,909,876 + -0.3
3,909,878 + -0.1
3,909,935 - +0.0
3,910,183 + HP15_3705 0.14 +0.2
3,910,191 + HP15_3705 0.15 -0.7
3,910,345 + HP15_3705 0.28 -0.6
3,910,410 + HP15_3705 0.34 -0.7
3,910,574 + HP15_3705 0.49 +0.7
3,910,806 + HP15_3705 0.69 -0.3

Or see this region's nucleotide sequence