Strain Fitness in Marinobacter adhaerens HP15 around HP15_3651

Experiment: m.b. Aluminum chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3649 and HP15_3650 are separated by 463 nucleotidesHP15_3650 and HP15_3651 are separated by 11 nucleotidesHP15_3651 and HP15_3652 are separated by 101 nucleotides HP15_3649: HP15_3649 - ribonucleotide-diphosphate reductase subunit alpha, at 3,842,051 to 3,844,816 _3649 HP15_3650: HP15_3650 - formamidase regulatory protein FmdB, at 3,845,280 to 3,845,627 _3650 HP15_3651: HP15_3651 - acetamidase/formamidase, at 3,845,639 to 3,846,871 _3651 HP15_3652: HP15_3652 - ATPase AAA-2 domain protein, at 3,846,973 to 3,848,016 _3652 Position (kb) 3845 3846 3847Strain fitness (log2 ratio) -2 -1 0 1 2at 3845.211 kb on + strandat 3845.219 kb on - strandat 3845.301 kb on - strandat 3845.335 kb on + strand, within HP15_3650at 3845.337 kb on + strand, within HP15_3650at 3845.343 kb on - strand, within HP15_3650at 3845.343 kb on - strand, within HP15_3650at 3845.343 kb on - strand, within HP15_3650at 3845.343 kb on - strand, within HP15_3650at 3845.343 kb on - strand, within HP15_3650at 3845.352 kb on + strand, within HP15_3650at 3845.396 kb on - strand, within HP15_3650at 3845.463 kb on - strand, within HP15_3650at 3845.543 kb on - strand, within HP15_3650at 3845.710 kb on + strandat 3845.710 kb on + strandat 3845.762 kb on - strandat 3845.810 kb on + strand, within HP15_3651at 3845.825 kb on + strand, within HP15_3651at 3845.825 kb on + strand, within HP15_3651at 3845.825 kb on + strand, within HP15_3651at 3845.832 kb on + strand, within HP15_3651at 3845.832 kb on + strand, within HP15_3651at 3845.988 kb on + strand, within HP15_3651at 3846.141 kb on + strand, within HP15_3651at 3846.144 kb on - strand, within HP15_3651at 3846.144 kb on - strand, within HP15_3651at 3846.144 kb on - strand, within HP15_3651at 3846.177 kb on - strand, within HP15_3651at 3846.283 kb on - strand, within HP15_3651at 3846.300 kb on + strand, within HP15_3651at 3846.300 kb on + strand, within HP15_3651at 3846.350 kb on - strand, within HP15_3651at 3846.375 kb on - strand, within HP15_3651at 3846.407 kb on + strand, within HP15_3651at 3846.521 kb on - strand, within HP15_3651at 3846.614 kb on - strand, within HP15_3651at 3846.625 kb on + strand, within HP15_3651at 3846.659 kb on + strand, within HP15_3651at 3846.679 kb on - strand, within HP15_3651at 3846.774 kb on - strandat 3846.834 kb on + strandat 3846.839 kb on + strandat 3846.852 kb on - strandat 3846.890 kb on - strandat 3846.936 kb on + strandat 3846.936 kb on + strandat 3847.014 kb on - strandat 3847.048 kb on - strandat 3847.160 kb on - strand, within HP15_3652at 3847.322 kb on - strand, within HP15_3652at 3847.371 kb on + strand, within HP15_3652at 3847.389 kb on + strand, within HP15_3652at 3847.397 kb on - strand, within HP15_3652at 3847.443 kb on - strand, within HP15_3652at 3847.443 kb on - strand, within HP15_3652at 3847.480 kb on + strand, within HP15_3652at 3847.510 kb on - strand, within HP15_3652at 3847.512 kb on - strand, within HP15_3652at 3847.562 kb on + strand, within HP15_3652at 3847.582 kb on + strand, within HP15_3652at 3847.590 kb on - strand, within HP15_3652at 3847.590 kb on - strand, within HP15_3652at 3847.592 kb on - strand, within HP15_3652at 3847.594 kb on + strand, within HP15_3652at 3847.616 kb on - strand, within HP15_3652at 3847.636 kb on + strand, within HP15_3652at 3847.659 kb on - strand, within HP15_3652at 3847.659 kb on - strand, within HP15_3652at 3847.659 kb on - strand, within HP15_3652at 3847.659 kb on - strand, within HP15_3652at 3847.659 kb on - strand, within HP15_3652at 3847.659 kb on - strand, within HP15_3652at 3847.664 kb on - strand, within HP15_3652at 3847.674 kb on - strand, within HP15_3652at 3847.778 kb on + strand, within HP15_3652at 3847.834 kb on - strand, within HP15_3652

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM
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3,845,211 + -0.7
3,845,219 - +1.3
3,845,301 - -0.2
3,845,335 + HP15_3650 0.16 -0.7
3,845,337 + HP15_3650 0.16 -0.6
3,845,343 - HP15_3650 0.18 -0.3
3,845,343 - HP15_3650 0.18 -0.1
3,845,343 - HP15_3650 0.18 +0.1
3,845,343 - HP15_3650 0.18 -0.5
3,845,343 - HP15_3650 0.18 +0.5
3,845,352 + HP15_3650 0.21 -0.0
3,845,396 - HP15_3650 0.33 -0.1
3,845,463 - HP15_3650 0.53 +1.0
3,845,543 - HP15_3650 0.76 +1.1
3,845,710 + +0.3
3,845,710 + +0.3
3,845,762 - +0.4
3,845,810 + HP15_3651 0.14 +0.4
3,845,825 + HP15_3651 0.15 +2.0
3,845,825 + HP15_3651 0.15 +0.2
3,845,825 + HP15_3651 0.15 +0.1
3,845,832 + HP15_3651 0.16 +0.1
3,845,832 + HP15_3651 0.16 +0.1
3,845,988 + HP15_3651 0.28 +0.7
3,846,141 + HP15_3651 0.41 +0.8
3,846,144 - HP15_3651 0.41 +0.3
3,846,144 - HP15_3651 0.41 -0.1
3,846,144 - HP15_3651 0.41 +0.0
3,846,177 - HP15_3651 0.44 +0.9
3,846,283 - HP15_3651 0.52 -0.2
3,846,300 + HP15_3651 0.54 +0.6
3,846,300 + HP15_3651 0.54 -0.4
3,846,350 - HP15_3651 0.58 +0.5
3,846,375 - HP15_3651 0.60 -0.2
3,846,407 + HP15_3651 0.62 -0.3
3,846,521 - HP15_3651 0.72 +0.7
3,846,614 - HP15_3651 0.79 -0.4
3,846,625 + HP15_3651 0.80 +0.9
3,846,659 + HP15_3651 0.83 +0.3
3,846,679 - HP15_3651 0.84 +2.1
3,846,774 - +0.3
3,846,834 + +0.6
3,846,839 + -0.2
3,846,852 - +0.6
3,846,890 - -0.5
3,846,936 + -0.6
3,846,936 + +0.6
3,847,014 - -0.1
3,847,048 - -0.4
3,847,160 - HP15_3652 0.18 -0.1
3,847,322 - HP15_3652 0.33 -1.2
3,847,371 + HP15_3652 0.38 +0.7
3,847,389 + HP15_3652 0.40 +1.6
3,847,397 - HP15_3652 0.41 -0.1
3,847,443 - HP15_3652 0.45 +0.0
3,847,443 - HP15_3652 0.45 -0.0
3,847,480 + HP15_3652 0.49 -0.8
3,847,510 - HP15_3652 0.51 +0.3
3,847,512 - HP15_3652 0.52 +2.1
3,847,562 + HP15_3652 0.56 +0.1
3,847,582 + HP15_3652 0.58 +0.0
3,847,590 - HP15_3652 0.59 -0.0
3,847,590 - HP15_3652 0.59 +0.9
3,847,592 - HP15_3652 0.59 -2.6
3,847,594 + HP15_3652 0.59 +0.2
3,847,616 - HP15_3652 0.62 -0.6
3,847,636 + HP15_3652 0.64 -0.2
3,847,659 - HP15_3652 0.66 -0.2
3,847,659 - HP15_3652 0.66 -0.1
3,847,659 - HP15_3652 0.66 -0.9
3,847,659 - HP15_3652 0.66 +1.0
3,847,659 - HP15_3652 0.66 +1.8
3,847,659 - HP15_3652 0.66 +0.2
3,847,664 - HP15_3652 0.66 -0.4
3,847,674 - HP15_3652 0.67 -0.3
3,847,778 + HP15_3652 0.77 -0.2
3,847,834 - HP15_3652 0.82 +0.3

Or see this region's nucleotide sequence