Experiment: m.b. Aluminum chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3649 and HP15_3650 are separated by 463 nucleotides HP15_3650 and HP15_3651 are separated by 11 nucleotides HP15_3651 and HP15_3652 are separated by 101 nucleotides
HP15_3649: HP15_3649 - ribonucleotide-diphosphate reductase subunit alpha, at 3,842,051 to 3,844,816
_3649
HP15_3650: HP15_3650 - formamidase regulatory protein FmdB, at 3,845,280 to 3,845,627
_3650
HP15_3651: HP15_3651 - acetamidase/formamidase, at 3,845,639 to 3,846,871
_3651
HP15_3652: HP15_3652 - ATPase AAA-2 domain protein, at 3,846,973 to 3,848,016
_3652
Position (kb)
3845
3846
3847 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3845.211 kb on + strand at 3845.219 kb on - strand at 3845.301 kb on - strand at 3845.335 kb on + strand, within HP15_3650 at 3845.337 kb on + strand, within HP15_3650 at 3845.343 kb on - strand, within HP15_3650 at 3845.343 kb on - strand, within HP15_3650 at 3845.343 kb on - strand, within HP15_3650 at 3845.343 kb on - strand, within HP15_3650 at 3845.343 kb on - strand, within HP15_3650 at 3845.352 kb on + strand, within HP15_3650 at 3845.396 kb on - strand, within HP15_3650 at 3845.463 kb on - strand, within HP15_3650 at 3845.543 kb on - strand, within HP15_3650 at 3845.710 kb on + strand at 3845.710 kb on + strand at 3845.762 kb on - strand at 3845.810 kb on + strand, within HP15_3651 at 3845.825 kb on + strand, within HP15_3651 at 3845.825 kb on + strand, within HP15_3651 at 3845.825 kb on + strand, within HP15_3651 at 3845.832 kb on + strand, within HP15_3651 at 3845.832 kb on + strand, within HP15_3651 at 3845.988 kb on + strand, within HP15_3651 at 3846.141 kb on + strand, within HP15_3651 at 3846.144 kb on - strand, within HP15_3651 at 3846.144 kb on - strand, within HP15_3651 at 3846.144 kb on - strand, within HP15_3651 at 3846.177 kb on - strand, within HP15_3651 at 3846.283 kb on - strand, within HP15_3651 at 3846.300 kb on + strand, within HP15_3651 at 3846.300 kb on + strand, within HP15_3651 at 3846.350 kb on - strand, within HP15_3651 at 3846.375 kb on - strand, within HP15_3651 at 3846.407 kb on + strand, within HP15_3651 at 3846.521 kb on - strand, within HP15_3651 at 3846.614 kb on - strand, within HP15_3651 at 3846.625 kb on + strand, within HP15_3651 at 3846.659 kb on + strand, within HP15_3651 at 3846.679 kb on - strand, within HP15_3651 at 3846.774 kb on - strand at 3846.834 kb on + strand at 3846.839 kb on + strand at 3846.852 kb on - strand at 3846.890 kb on - strand at 3846.936 kb on + strand at 3846.936 kb on + strand at 3847.014 kb on - strand at 3847.048 kb on - strand at 3847.160 kb on - strand, within HP15_3652 at 3847.322 kb on - strand, within HP15_3652 at 3847.371 kb on + strand, within HP15_3652 at 3847.389 kb on + strand, within HP15_3652 at 3847.397 kb on - strand, within HP15_3652 at 3847.443 kb on - strand, within HP15_3652 at 3847.443 kb on - strand, within HP15_3652 at 3847.480 kb on + strand, within HP15_3652 at 3847.510 kb on - strand, within HP15_3652 at 3847.512 kb on - strand, within HP15_3652 at 3847.562 kb on + strand, within HP15_3652 at 3847.582 kb on + strand, within HP15_3652 at 3847.590 kb on - strand, within HP15_3652 at 3847.590 kb on - strand, within HP15_3652 at 3847.592 kb on - strand, within HP15_3652 at 3847.594 kb on + strand, within HP15_3652 at 3847.616 kb on - strand, within HP15_3652 at 3847.636 kb on + strand, within HP15_3652 at 3847.659 kb on - strand, within HP15_3652 at 3847.659 kb on - strand, within HP15_3652 at 3847.659 kb on - strand, within HP15_3652 at 3847.659 kb on - strand, within HP15_3652 at 3847.659 kb on - strand, within HP15_3652 at 3847.659 kb on - strand, within HP15_3652 at 3847.664 kb on - strand, within HP15_3652 at 3847.674 kb on - strand, within HP15_3652 at 3847.778 kb on + strand, within HP15_3652 at 3847.834 kb on - strand, within HP15_3652
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM remove 3,845,211 + -0.7 3,845,219 - +1.3 3,845,301 - -0.2 3,845,335 + HP15_3650 0.16 -0.7 3,845,337 + HP15_3650 0.16 -0.6 3,845,343 - HP15_3650 0.18 -0.3 3,845,343 - HP15_3650 0.18 -0.1 3,845,343 - HP15_3650 0.18 +0.1 3,845,343 - HP15_3650 0.18 -0.5 3,845,343 - HP15_3650 0.18 +0.5 3,845,352 + HP15_3650 0.21 -0.0 3,845,396 - HP15_3650 0.33 -0.1 3,845,463 - HP15_3650 0.53 +1.0 3,845,543 - HP15_3650 0.76 +1.1 3,845,710 + +0.3 3,845,710 + +0.3 3,845,762 - +0.4 3,845,810 + HP15_3651 0.14 +0.4 3,845,825 + HP15_3651 0.15 +2.0 3,845,825 + HP15_3651 0.15 +0.2 3,845,825 + HP15_3651 0.15 +0.1 3,845,832 + HP15_3651 0.16 +0.1 3,845,832 + HP15_3651 0.16 +0.1 3,845,988 + HP15_3651 0.28 +0.7 3,846,141 + HP15_3651 0.41 +0.8 3,846,144 - HP15_3651 0.41 +0.3 3,846,144 - HP15_3651 0.41 -0.1 3,846,144 - HP15_3651 0.41 +0.0 3,846,177 - HP15_3651 0.44 +0.9 3,846,283 - HP15_3651 0.52 -0.2 3,846,300 + HP15_3651 0.54 +0.6 3,846,300 + HP15_3651 0.54 -0.4 3,846,350 - HP15_3651 0.58 +0.5 3,846,375 - HP15_3651 0.60 -0.2 3,846,407 + HP15_3651 0.62 -0.3 3,846,521 - HP15_3651 0.72 +0.7 3,846,614 - HP15_3651 0.79 -0.4 3,846,625 + HP15_3651 0.80 +0.9 3,846,659 + HP15_3651 0.83 +0.3 3,846,679 - HP15_3651 0.84 +2.1 3,846,774 - +0.3 3,846,834 + +0.6 3,846,839 + -0.2 3,846,852 - +0.6 3,846,890 - -0.5 3,846,936 + -0.6 3,846,936 + +0.6 3,847,014 - -0.1 3,847,048 - -0.4 3,847,160 - HP15_3652 0.18 -0.1 3,847,322 - HP15_3652 0.33 -1.2 3,847,371 + HP15_3652 0.38 +0.7 3,847,389 + HP15_3652 0.40 +1.6 3,847,397 - HP15_3652 0.41 -0.1 3,847,443 - HP15_3652 0.45 +0.0 3,847,443 - HP15_3652 0.45 -0.0 3,847,480 + HP15_3652 0.49 -0.8 3,847,510 - HP15_3652 0.51 +0.3 3,847,512 - HP15_3652 0.52 +2.1 3,847,562 + HP15_3652 0.56 +0.1 3,847,582 + HP15_3652 0.58 +0.0 3,847,590 - HP15_3652 0.59 -0.0 3,847,590 - HP15_3652 0.59 +0.9 3,847,592 - HP15_3652 0.59 -2.6 3,847,594 + HP15_3652 0.59 +0.2 3,847,616 - HP15_3652 0.62 -0.6 3,847,636 + HP15_3652 0.64 -0.2 3,847,659 - HP15_3652 0.66 -0.2 3,847,659 - HP15_3652 0.66 -0.1 3,847,659 - HP15_3652 0.66 -0.9 3,847,659 - HP15_3652 0.66 +1.0 3,847,659 - HP15_3652 0.66 +1.8 3,847,659 - HP15_3652 0.66 +0.2 3,847,664 - HP15_3652 0.66 -0.4 3,847,674 - HP15_3652 0.67 -0.3 3,847,778 + HP15_3652 0.77 -0.2 3,847,834 - HP15_3652 0.82 +0.3
Or see this region's nucleotide sequence