Strain Fitness in Marinobacter adhaerens HP15 around HP15_3622

Experiment: m.b. Aluminum chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3620 and HP15_3621 overlap by 20 nucleotidesHP15_3621 and HP15_3622 are separated by 77 nucleotidesHP15_3622 and HP15_3623 overlap by 14 nucleotidesHP15_3623 and HP15_3624 are separated by 68 nucleotides HP15_3620: HP15_3620 - conserved hypothetical protein, at 3,817,218 to 3,817,973 _3620 HP15_3621: HP15_3621 - antioxidant, AhpC/Tsa family protein, at 3,817,954 to 3,818,430 _3621 HP15_3622: HP15_3622 - peroxiredoxin, at 3,818,508 to 3,819,071 _3622 HP15_3623: HP15_3623 - hypothetical protein, at 3,819,058 to 3,819,165 _3623 HP15_3624: HP15_3624 - transporter, BCCT family protein, at 3,819,234 to 3,820,451 _3624 Position (kb) 3818 3819 3820Strain fitness (log2 ratio) -2 -1 0 1at 3817.526 kb on - strand, within HP15_3620at 3817.666 kb on - strand, within HP15_3620at 3817.666 kb on - strand, within HP15_3620at 3817.686 kb on - strand, within HP15_3620at 3817.691 kb on - strand, within HP15_3620at 3817.699 kb on + strand, within HP15_3620at 3817.709 kb on + strand, within HP15_3620at 3817.717 kb on - strand, within HP15_3620at 3817.717 kb on - strand, within HP15_3620at 3817.717 kb on - strand, within HP15_3620at 3817.743 kb on - strand, within HP15_3620at 3817.746 kb on - strand, within HP15_3620at 3817.944 kb on + strandat 3817.952 kb on - strandat 3817.969 kb on + strandat 3817.970 kb on + strandat 3818.062 kb on + strand, within HP15_3621at 3818.097 kb on + strand, within HP15_3621at 3818.097 kb on - strand, within HP15_3621at 3818.328 kb on + strand, within HP15_3621at 3818.328 kb on + strand, within HP15_3621at 3818.375 kb on - strand, within HP15_3621at 3818.506 kb on + strandat 3818.506 kb on + strandat 3818.506 kb on + strandat 3818.514 kb on - strandat 3818.533 kb on - strandat 3818.678 kb on + strand, within HP15_3622at 3818.678 kb on + strand, within HP15_3622at 3818.678 kb on + strand, within HP15_3622at 3818.686 kb on - strand, within HP15_3622at 3818.723 kb on + strand, within HP15_3622at 3818.724 kb on + strand, within HP15_3622at 3818.980 kb on + strand, within HP15_3622at 3818.995 kb on + strand, within HP15_3622at 3819.003 kb on - strand, within HP15_3622at 3819.101 kb on + strand, within HP15_3623at 3819.231 kb on + strandat 3819.239 kb on - strandat 3819.239 kb on - strandat 3819.239 kb on - strandat 3819.339 kb on + strandat 3819.360 kb on - strand, within HP15_3624at 3819.416 kb on - strand, within HP15_3624at 3819.440 kb on + strand, within HP15_3624at 3819.462 kb on + strand, within HP15_3624at 3819.484 kb on - strand, within HP15_3624at 3819.490 kb on + strand, within HP15_3624at 3819.519 kb on + strand, within HP15_3624at 3819.584 kb on - strand, within HP15_3624at 3819.648 kb on - strand, within HP15_3624at 3819.717 kb on + strand, within HP15_3624at 3819.747 kb on - strand, within HP15_3624at 3819.747 kb on - strand, within HP15_3624at 3819.809 kb on + strand, within HP15_3624at 3819.840 kb on + strand, within HP15_3624at 3819.901 kb on + strand, within HP15_3624at 3819.901 kb on + strand, within HP15_3624at 3819.907 kb on - strand, within HP15_3624

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM
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3,817,526 - HP15_3620 0.41 -1.2
3,817,666 - HP15_3620 0.59 -1.2
3,817,666 - HP15_3620 0.59 -1.2
3,817,686 - HP15_3620 0.62 -1.6
3,817,691 - HP15_3620 0.63 -0.9
3,817,699 + HP15_3620 0.64 -1.7
3,817,709 + HP15_3620 0.65 -1.0
3,817,717 - HP15_3620 0.66 -1.4
3,817,717 - HP15_3620 0.66 -1.5
3,817,717 - HP15_3620 0.66 -1.3
3,817,743 - HP15_3620 0.69 -1.5
3,817,746 - HP15_3620 0.70 -0.1
3,817,944 + -1.1
3,817,952 - -0.6
3,817,969 + -0.1
3,817,970 + -0.8
3,818,062 + HP15_3621 0.23 -0.2
3,818,097 + HP15_3621 0.30 +0.2
3,818,097 - HP15_3621 0.30 -1.6
3,818,328 + HP15_3621 0.78 +0.0
3,818,328 + HP15_3621 0.78 -0.9
3,818,375 - HP15_3621 0.88 -0.5
3,818,506 + +0.2
3,818,506 + +0.3
3,818,506 + -0.2
3,818,514 - -0.4
3,818,533 - +0.6
3,818,678 + HP15_3622 0.30 +0.9
3,818,678 + HP15_3622 0.30 +1.0
3,818,678 + HP15_3622 0.30 -0.0
3,818,686 - HP15_3622 0.32 +1.1
3,818,723 + HP15_3622 0.38 +1.0
3,818,724 + HP15_3622 0.38 +1.1
3,818,980 + HP15_3622 0.84 +1.0
3,818,995 + HP15_3622 0.86 +1.5
3,819,003 - HP15_3622 0.88 -0.3
3,819,101 + HP15_3623 0.40 +0.9
3,819,231 + -0.4
3,819,239 - -0.2
3,819,239 - -0.3
3,819,239 - +0.0
3,819,339 + +0.6
3,819,360 - HP15_3624 0.10 -0.5
3,819,416 - HP15_3624 0.15 -0.7
3,819,440 + HP15_3624 0.17 +0.1
3,819,462 + HP15_3624 0.19 +0.1
3,819,484 - HP15_3624 0.21 -0.8
3,819,490 + HP15_3624 0.21 -0.2
3,819,519 + HP15_3624 0.23 -0.1
3,819,584 - HP15_3624 0.29 -0.0
3,819,648 - HP15_3624 0.34 -0.5
3,819,717 + HP15_3624 0.40 -2.4
3,819,747 - HP15_3624 0.42 +0.1
3,819,747 - HP15_3624 0.42 +0.3
3,819,809 + HP15_3624 0.47 -0.5
3,819,840 + HP15_3624 0.50 +0.1
3,819,901 + HP15_3624 0.55 -1.1
3,819,901 + HP15_3624 0.55 -1.4
3,819,907 - HP15_3624 0.55 -0.5

Or see this region's nucleotide sequence