Strain Fitness in Marinobacter adhaerens HP15 around HP15_3601

Experiment: m.b. Aluminum chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3600 and HP15_3601 are separated by 30 nucleotidesHP15_3601 and HP15_3602 are separated by 157 nucleotides HP15_3600: HP15_3600 - NAD(P) transhydrogenase subunit beta, at 3,796,058 to 3,796,942 _3600 HP15_3601: HP15_3601 - conserved hypothetical protein, secreted, at 3,796,973 to 3,797,278 _3601 HP15_3602: HP15_3602 - NADH-dependent flavin oxidoreductase, Oye family protein, at 3,797,436 to 3,798,548 _3602 Position (kb) 3796 3797 3798Strain fitness (log2 ratio) -2 -1 0 1 2at 3795.999 kb on + strandat 3796.006 kb on + strandat 3796.007 kb on + strandat 3796.014 kb on - strandat 3796.014 kb on - strandat 3796.061 kb on - strandat 3796.100 kb on + strandat 3796.103 kb on - strandat 3796.108 kb on - strandat 3796.108 kb on - strandat 3796.108 kb on - strandat 3796.108 kb on - strandat 3796.113 kb on - strandat 3796.245 kb on + strand, within HP15_3600at 3796.245 kb on + strand, within HP15_3600at 3796.263 kb on - strand, within HP15_3600at 3796.299 kb on - strand, within HP15_3600at 3796.302 kb on + strand, within HP15_3600at 3796.312 kb on + strand, within HP15_3600at 3796.331 kb on + strand, within HP15_3600at 3796.331 kb on + strand, within HP15_3600at 3796.332 kb on - strand, within HP15_3600at 3796.339 kb on - strand, within HP15_3600at 3796.339 kb on - strand, within HP15_3600at 3796.339 kb on - strand, within HP15_3600at 3796.339 kb on - strand, within HP15_3600at 3796.417 kb on - strand, within HP15_3600at 3796.431 kb on + strand, within HP15_3600at 3796.439 kb on - strand, within HP15_3600at 3796.446 kb on + strand, within HP15_3600at 3796.446 kb on + strand, within HP15_3600at 3796.454 kb on - strand, within HP15_3600at 3796.565 kb on - strand, within HP15_3600at 3796.605 kb on + strand, within HP15_3600at 3796.725 kb on + strand, within HP15_3600at 3796.796 kb on + strand, within HP15_3600at 3796.802 kb on - strand, within HP15_3600at 3796.843 kb on - strand, within HP15_3600at 3796.888 kb on - strandat 3796.906 kb on - strandat 3796.938 kb on + strandat 3796.938 kb on + strandat 3796.943 kb on + strandat 3796.946 kb on - strandat 3796.983 kb on - strandat 3796.993 kb on - strandat 3797.015 kb on - strand, within HP15_3601at 3797.054 kb on + strand, within HP15_3601at 3797.077 kb on - strand, within HP15_3601at 3797.093 kb on - strand, within HP15_3601at 3797.135 kb on + strand, within HP15_3601at 3797.222 kb on + strand, within HP15_3601at 3797.222 kb on + strand, within HP15_3601at 3797.320 kb on + strandat 3797.394 kb on - strandat 3797.396 kb on - strandat 3797.437 kb on - strandat 3797.476 kb on + strandat 3797.523 kb on + strandat 3797.523 kb on + strandat 3797.560 kb on - strand, within HP15_3602at 3797.560 kb on - strand, within HP15_3602at 3797.665 kb on - strand, within HP15_3602at 3797.697 kb on + strand, within HP15_3602at 3797.697 kb on + strand, within HP15_3602at 3797.704 kb on - strand, within HP15_3602at 3797.718 kb on + strand, within HP15_3602at 3797.718 kb on + strand, within HP15_3602at 3797.718 kb on + strand, within HP15_3602at 3797.726 kb on - strand, within HP15_3602at 3797.726 kb on - strand, within HP15_3602at 3797.830 kb on - strand, within HP15_3602at 3797.895 kb on + strand, within HP15_3602at 3797.895 kb on + strand, within HP15_3602at 3797.903 kb on - strand, within HP15_3602at 3797.907 kb on - strand, within HP15_3602at 3797.962 kb on - strand, within HP15_3602at 3797.965 kb on + strand, within HP15_3602at 3797.967 kb on + strand, within HP15_3602at 3797.987 kb on + strand, within HP15_3602at 3797.995 kb on - strand, within HP15_3602at 3798.162 kb on + strand, within HP15_3602at 3798.182 kb on + strand, within HP15_3602at 3798.237 kb on - strand, within HP15_3602

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM
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3,795,999 + +1.2
3,796,006 + +0.1
3,796,007 + -1.1
3,796,014 - +0.5
3,796,014 - -0.3
3,796,061 - -0.1
3,796,100 + -2.3
3,796,103 - +0.1
3,796,108 - +0.3
3,796,108 - +0.9
3,796,108 - -0.6
3,796,108 - -1.2
3,796,113 - -0.2
3,796,245 + HP15_3600 0.21 +0.2
3,796,245 + HP15_3600 0.21 +1.3
3,796,263 - HP15_3600 0.23 -0.8
3,796,299 - HP15_3600 0.27 +0.0
3,796,302 + HP15_3600 0.28 -0.8
3,796,312 + HP15_3600 0.29 -0.7
3,796,331 + HP15_3600 0.31 -0.2
3,796,331 + HP15_3600 0.31 +0.1
3,796,332 - HP15_3600 0.31 -0.7
3,796,339 - HP15_3600 0.32 -0.7
3,796,339 - HP15_3600 0.32 -1.1
3,796,339 - HP15_3600 0.32 +0.0
3,796,339 - HP15_3600 0.32 -1.4
3,796,417 - HP15_3600 0.41 -0.7
3,796,431 + HP15_3600 0.42 +0.7
3,796,439 - HP15_3600 0.43 +0.0
3,796,446 + HP15_3600 0.44 -0.5
3,796,446 + HP15_3600 0.44 -0.5
3,796,454 - HP15_3600 0.45 +0.4
3,796,565 - HP15_3600 0.57 -0.6
3,796,605 + HP15_3600 0.62 +0.3
3,796,725 + HP15_3600 0.75 +1.0
3,796,796 + HP15_3600 0.83 +0.1
3,796,802 - HP15_3600 0.84 -0.6
3,796,843 - HP15_3600 0.89 -0.4
3,796,888 - +0.2
3,796,906 - +0.7
3,796,938 + +0.2
3,796,938 + +1.1
3,796,943 + +0.6
3,796,946 - +0.4
3,796,983 - +0.3
3,796,993 - -0.2
3,797,015 - HP15_3601 0.14 -0.1
3,797,054 + HP15_3601 0.26 +0.3
3,797,077 - HP15_3601 0.34 +0.7
3,797,093 - HP15_3601 0.39 +0.7
3,797,135 + HP15_3601 0.53 +0.9
3,797,222 + HP15_3601 0.81 +0.3
3,797,222 + HP15_3601 0.81 +0.9
3,797,320 + +0.2
3,797,394 - -0.3
3,797,396 - +0.2
3,797,437 - -0.1
3,797,476 + +0.3
3,797,523 + -0.6
3,797,523 + +0.1
3,797,560 - HP15_3602 0.11 -0.3
3,797,560 - HP15_3602 0.11 -0.3
3,797,665 - HP15_3602 0.21 +0.2
3,797,697 + HP15_3602 0.23 +1.0
3,797,697 + HP15_3602 0.23 +1.8
3,797,704 - HP15_3602 0.24 +0.2
3,797,718 + HP15_3602 0.25 -1.2
3,797,718 + HP15_3602 0.25 -1.3
3,797,718 + HP15_3602 0.25 +0.5
3,797,726 - HP15_3602 0.26 +0.0
3,797,726 - HP15_3602 0.26 +0.2
3,797,830 - HP15_3602 0.35 +0.5
3,797,895 + HP15_3602 0.41 +0.5
3,797,895 + HP15_3602 0.41 -0.1
3,797,903 - HP15_3602 0.42 +1.3
3,797,907 - HP15_3602 0.42 -0.7
3,797,962 - HP15_3602 0.47 -0.4
3,797,965 + HP15_3602 0.48 -0.2
3,797,967 + HP15_3602 0.48 +0.1
3,797,987 + HP15_3602 0.50 +0.0
3,797,995 - HP15_3602 0.50 +0.7
3,798,162 + HP15_3602 0.65 -0.6
3,798,182 + HP15_3602 0.67 -1.0
3,798,237 - HP15_3602 0.72 +0.8

Or see this region's nucleotide sequence