Experiment: m.b. Aluminum chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3552 and HP15_3553 are separated by 61 nucleotides HP15_3553 and HP15_3554 are separated by 300 nucleotides HP15_3554 and HP15_3555 are separated by 17 nucleotides HP15_3555 and HP15_3556 overlap by 17 nucleotides
HP15_3552: HP15_3552 - exoribonuclease R, at 3,741,721 to 3,743,706
_3552
HP15_3553: HP15_3553 - conserved hypothetical protein, at 3,743,768 to 3,743,968
_3553
HP15_3554: HP15_3554 - carboxyl-terminal protease-like protein, at 3,744,269 to 3,745,750
_3554
HP15_3555: HP15_3555 - membrane lipoprotein lipid attachment site-like protein, at 3,745,768 to 3,746,409
_3555
HP15_3556: HP15_3556 - conserved hypothetical protein, secreted, at 3,746,393 to 3,747,637
_3556
Position (kb)
3744
3745
3746 Strain fitness (log2 ratio)
-1
0
1 at 3743.282 kb on - strand, within HP15_3552 at 3743.344 kb on + strand, within HP15_3552 at 3743.344 kb on + strand, within HP15_3552 at 3743.383 kb on - strand, within HP15_3552 at 3743.444 kb on + strand, within HP15_3552 at 3743.452 kb on + strand, within HP15_3552 at 3743.534 kb on + strand at 3743.542 kb on - strand at 3743.880 kb on + strand, within HP15_3553 at 3743.897 kb on + strand, within HP15_3553 at 3743.897 kb on + strand, within HP15_3553 at 3743.897 kb on + strand, within HP15_3553 at 3743.897 kb on + strand, within HP15_3553 at 3743.897 kb on + strand, within HP15_3553 at 3743.905 kb on - strand, within HP15_3553 at 3744.132 kb on + strand at 3744.250 kb on + strand at 3744.274 kb on + strand at 3744.311 kb on - strand at 3744.348 kb on - strand at 3744.373 kb on - strand at 3745.244 kb on - strand, within HP15_3554 at 3745.676 kb on - strand at 3746.591 kb on + strand, within HP15_3556
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM remove 3,743,282 - HP15_3552 0.79 -0.2 3,743,344 + HP15_3552 0.82 -0.5 3,743,344 + HP15_3552 0.82 -0.3 3,743,383 - HP15_3552 0.84 +0.3 3,743,444 + HP15_3552 0.87 -0.5 3,743,452 + HP15_3552 0.87 -1.5 3,743,534 + +0.7 3,743,542 - -0.2 3,743,880 + HP15_3553 0.56 -0.3 3,743,897 + HP15_3553 0.64 +0.2 3,743,897 + HP15_3553 0.64 +0.9 3,743,897 + HP15_3553 0.64 -0.1 3,743,897 + HP15_3553 0.64 +0.1 3,743,897 + HP15_3553 0.64 -0.7 3,743,905 - HP15_3553 0.68 -1.6 3,744,132 + +0.2 3,744,250 + -0.5 3,744,274 + -0.8 3,744,311 - -0.1 3,744,348 - +0.3 3,744,373 - -0.0 3,745,244 - HP15_3554 0.66 +0.5 3,745,676 - -0.1 3,746,591 + HP15_3556 0.16 -0.0
Or see this region's nucleotide sequence