Experiment: m.b. Aluminum chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3404 and HP15_3405 are separated by 250 nucleotides HP15_3405 and HP15_3407 are separated by 4 nucleotides
HP15_3404: HP15_3404 - succinic semialdehyde dehydrogenase, at 3,576,376 to 3,577,827
_3404
HP15_3405: HP15_3405 - histone deacetylase superfamily, at 3,578,078 to 3,579,025
_3405
HP15_3407: HP15_3407 - thiamine biosynthesis protein, at 3,579,030 to 3,580,418
_3407
Position (kb)
3578
3579
3580 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3577.084 kb on - strand, within HP15_3404 at 3577.141 kb on + strand, within HP15_3404 at 3577.200 kb on + strand, within HP15_3404 at 3577.299 kb on + strand, within HP15_3404 at 3577.399 kb on + strand, within HP15_3404 at 3577.399 kb on + strand, within HP15_3404 at 3577.457 kb on + strand, within HP15_3404 at 3577.519 kb on - strand, within HP15_3404 at 3577.534 kb on + strand, within HP15_3404 at 3577.537 kb on - strand, within HP15_3404 at 3577.559 kb on - strand, within HP15_3404 at 3577.562 kb on + strand, within HP15_3404 at 3577.597 kb on - strand, within HP15_3404 at 3577.597 kb on - strand, within HP15_3404 at 3577.639 kb on + strand, within HP15_3404 at 3577.647 kb on - strand, within HP15_3404 at 3577.708 kb on - strand at 3577.708 kb on - strand at 3577.870 kb on + strand at 3577.948 kb on - strand at 3577.960 kb on - strand at 3577.968 kb on + strand at 3578.153 kb on - strand at 3578.160 kb on + strand at 3578.201 kb on - strand, within HP15_3405 at 3578.389 kb on - strand, within HP15_3405 at 3578.399 kb on - strand, within HP15_3405 at 3578.423 kb on + strand, within HP15_3405 at 3578.454 kb on - strand, within HP15_3405 at 3578.638 kb on + strand, within HP15_3405 at 3578.646 kb on - strand, within HP15_3405 at 3578.646 kb on - strand, within HP15_3405 at 3578.793 kb on + strand, within HP15_3405 at 3578.812 kb on + strand, within HP15_3405 at 3578.820 kb on - strand, within HP15_3405 at 3578.843 kb on + strand, within HP15_3405 at 3578.872 kb on + strand, within HP15_3405 at 3578.905 kb on - strand, within HP15_3405 at 3578.936 kb on - strand at 3579.073 kb on + strand at 3579.078 kb on + strand at 3579.081 kb on - strand at 3579.237 kb on - strand, within HP15_3407 at 3579.559 kb on - strand, within HP15_3407 at 3579.598 kb on - strand, within HP15_3407 at 3579.598 kb on - strand, within HP15_3407 at 3579.611 kb on - strand, within HP15_3407 at 3579.760 kb on + strand, within HP15_3407 at 3579.972 kb on - strand, within HP15_3407
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM remove 3,577,084 - HP15_3404 0.49 +0.5 3,577,141 + HP15_3404 0.53 +1.2 3,577,200 + HP15_3404 0.57 -1.2 3,577,299 + HP15_3404 0.64 -0.2 3,577,399 + HP15_3404 0.70 -0.3 3,577,399 + HP15_3404 0.70 +0.6 3,577,457 + HP15_3404 0.74 +0.4 3,577,519 - HP15_3404 0.79 +0.8 3,577,534 + HP15_3404 0.80 +0.5 3,577,537 - HP15_3404 0.80 -0.5 3,577,559 - HP15_3404 0.81 +0.0 3,577,562 + HP15_3404 0.82 +0.4 3,577,597 - HP15_3404 0.84 +0.3 3,577,597 - HP15_3404 0.84 -1.8 3,577,639 + HP15_3404 0.87 +0.3 3,577,647 - HP15_3404 0.88 +0.4 3,577,708 - -0.3 3,577,708 - +0.1 3,577,870 + -0.7 3,577,948 - -0.3 3,577,960 - +0.7 3,577,968 + +0.7 3,578,153 - +0.3 3,578,160 + +0.5 3,578,201 - HP15_3405 0.13 -1.1 3,578,389 - HP15_3405 0.33 +1.2 3,578,399 - HP15_3405 0.34 +0.2 3,578,423 + HP15_3405 0.36 +1.1 3,578,454 - HP15_3405 0.40 -0.2 3,578,638 + HP15_3405 0.59 -2.9 3,578,646 - HP15_3405 0.60 +0.3 3,578,646 - HP15_3405 0.60 -0.2 3,578,793 + HP15_3405 0.75 -0.9 3,578,812 + HP15_3405 0.77 -0.3 3,578,820 - HP15_3405 0.78 -0.0 3,578,843 + HP15_3405 0.81 +0.1 3,578,872 + HP15_3405 0.84 +1.7 3,578,905 - HP15_3405 0.87 -0.3 3,578,936 - +0.7 3,579,073 + +1.8 3,579,078 + +0.6 3,579,081 - +0.1 3,579,237 - HP15_3407 0.15 +0.7 3,579,559 - HP15_3407 0.38 +0.2 3,579,598 - HP15_3407 0.41 -0.2 3,579,598 - HP15_3407 0.41 -0.3 3,579,611 - HP15_3407 0.42 -0.2 3,579,760 + HP15_3407 0.53 +1.3 3,579,972 - HP15_3407 0.68 +0.2
Or see this region's nucleotide sequence