Strain Fitness in Marinobacter adhaerens HP15 around HP15_3383

Experiment: m.b. Aluminum chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3381 and HP15_3382 are separated by 170 nucleotidesHP15_3382 and HP15_3383 are separated by 82 nucleotidesHP15_3383 and HP15_3384 are separated by 41 nucleotidesHP15_3384 and HP15_3385 are separated by 152 nucleotides HP15_3381: HP15_3381 - MscS mechanosensitive ion channel, at 3,549,918 to 3,550,751 _3381 HP15_3382: HP15_3382 - YbaK/prolyl-tRNA synthetase associated region, at 3,550,922 to 3,551,479 _3382 HP15_3383: HP15_3383 - ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family, at 3,551,562 to 3,552,857 _3383 HP15_3384: HP15_3384 - HIT (histidine triad) family protein, at 3,552,899 to 3,553,264 _3384 HP15_3385: HP15_3385 - phosphate uptake regulator, PhoU, at 3,553,417 to 3,554,154 _3385 Position (kb) 3551 3552 3553Strain fitness (log2 ratio) -1 0 1at 3550.574 kb on - strand, within HP15_3381at 3550.744 kb on - strandat 3550.806 kb on - strandat 3550.806 kb on - strandat 3550.807 kb on + strandat 3550.981 kb on + strand, within HP15_3382at 3550.988 kb on - strand, within HP15_3382at 3551.226 kb on + strand, within HP15_3382at 3551.430 kb on + strandat 3551.433 kb on - strandat 3551.438 kb on - strandat 3551.455 kb on + strandat 3551.542 kb on + strandat 3552.801 kb on - strandat 3552.849 kb on - strandat 3552.979 kb on - strand, within HP15_3384at 3552.980 kb on - strand, within HP15_3384at 3553.086 kb on - strand, within HP15_3384at 3553.151 kb on + strand, within HP15_3384at 3553.220 kb on + strand, within HP15_3384at 3553.220 kb on + strand, within HP15_3384at 3553.228 kb on - strandat 3553.228 kb on - strandat 3553.278 kb on + strandat 3553.320 kb on + strandat 3553.361 kb on - strandat 3553.398 kb on + strandat 3553.410 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM
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3,550,574 - HP15_3381 0.79 +0.0
3,550,744 - +0.2
3,550,806 - +0.3
3,550,806 - +0.0
3,550,807 + +0.3
3,550,981 + HP15_3382 0.11 -0.2
3,550,988 - HP15_3382 0.12 -0.8
3,551,226 + HP15_3382 0.54 -0.1
3,551,430 + +0.2
3,551,433 - -1.7
3,551,438 - -0.5
3,551,455 + +0.4
3,551,542 + -0.3
3,552,801 - -0.9
3,552,849 - -1.7
3,552,979 - HP15_3384 0.22 +0.1
3,552,980 - HP15_3384 0.22 -0.0
3,553,086 - HP15_3384 0.51 +0.0
3,553,151 + HP15_3384 0.69 +0.2
3,553,220 + HP15_3384 0.88 +0.2
3,553,220 + HP15_3384 0.88 +0.2
3,553,228 - -0.5
3,553,228 - +0.3
3,553,278 + +0.3
3,553,320 + +0.1
3,553,361 - +0.9
3,553,398 + +0.1
3,553,410 + +0.3

Or see this region's nucleotide sequence