Experiment: m.b. Aluminum chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3375 and HP15_3376 are separated by 130 nucleotides HP15_3376 and HP15_3377 are separated by 16 nucleotides HP15_3377 and HP15_3378 are separated by 219 nucleotides
HP15_3375: HP15_3375 - acyl-coenzyme A dehydrogenase, at 3,540,726 to 3,543,176
_3375
HP15_3376: HP15_3376 - RNA polymerase-associated protein RapA, at 3,543,307 to 3,546,168
_3376
HP15_3377: HP15_3377 - sulfate transport protein CysZ, at 3,546,185 to 3,546,811
_3377
HP15_3378: HP15_3378 - VanZ family protein, at 3,547,031 to 3,547,435
_3378
Position (kb)
3543
3544
3545
3546
3547 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3542.324 kb on + strand, within HP15_3375 at 3542.412 kb on + strand, within HP15_3375 at 3542.459 kb on - strand, within HP15_3375 at 3542.483 kb on + strand, within HP15_3375 at 3542.521 kb on + strand, within HP15_3375 at 3542.565 kb on - strand, within HP15_3375 at 3542.639 kb on + strand, within HP15_3375 at 3542.647 kb on + strand, within HP15_3375 at 3542.649 kb on + strand, within HP15_3375 at 3542.657 kb on - strand, within HP15_3375 at 3542.718 kb on - strand, within HP15_3375 at 3542.743 kb on + strand, within HP15_3375 at 3542.749 kb on - strand, within HP15_3375 at 3542.793 kb on + strand, within HP15_3375 at 3542.857 kb on + strand, within HP15_3375 at 3543.140 kb on - strand at 3543.161 kb on + strand at 3543.169 kb on - strand at 3543.178 kb on + strand at 3543.248 kb on + strand at 3543.248 kb on + strand at 3543.248 kb on + strand at 3543.256 kb on - strand at 3543.349 kb on + strand at 3543.374 kb on + strand at 3543.516 kb on - strand at 3543.551 kb on + strand at 3543.583 kb on + strand at 3543.591 kb on - strand at 3543.591 kb on - strand at 3543.591 kb on - strand at 3543.655 kb on - strand, within HP15_3376 at 3543.689 kb on + strand, within HP15_3376 at 3543.704 kb on + strand, within HP15_3376 at 3543.709 kb on + strand, within HP15_3376 at 3543.714 kb on + strand, within HP15_3376 at 3543.739 kb on + strand, within HP15_3376 at 3543.742 kb on - strand, within HP15_3376 at 3543.766 kb on - strand, within HP15_3376 at 3543.822 kb on + strand, within HP15_3376 at 3543.822 kb on + strand, within HP15_3376 at 3543.898 kb on + strand, within HP15_3376 at 3543.959 kb on + strand, within HP15_3376 at 3544.052 kb on + strand, within HP15_3376 at 3544.094 kb on + strand, within HP15_3376 at 3544.141 kb on + strand, within HP15_3376 at 3544.210 kb on - strand, within HP15_3376 at 3544.224 kb on + strand, within HP15_3376 at 3544.232 kb on - strand, within HP15_3376 at 3544.318 kb on - strand, within HP15_3376 at 3544.320 kb on - strand, within HP15_3376 at 3544.331 kb on - strand, within HP15_3376 at 3544.455 kb on + strand, within HP15_3376 at 3544.593 kb on - strand, within HP15_3376 at 3544.809 kb on - strand, within HP15_3376 at 3544.809 kb on - strand, within HP15_3376 at 3544.836 kb on - strand, within HP15_3376 at 3544.844 kb on - strand, within HP15_3376 at 3544.915 kb on - strand, within HP15_3376 at 3544.989 kb on + strand, within HP15_3376 at 3545.033 kb on + strand, within HP15_3376 at 3545.062 kb on + strand, within HP15_3376 at 3545.062 kb on + strand, within HP15_3376 at 3545.070 kb on - strand, within HP15_3376 at 3545.177 kb on - strand, within HP15_3376 at 3545.204 kb on - strand, within HP15_3376 at 3545.235 kb on + strand, within HP15_3376 at 3545.250 kb on + strand, within HP15_3376 at 3545.250 kb on + strand, within HP15_3376 at 3545.250 kb on + strand, within HP15_3376 at 3545.258 kb on - strand, within HP15_3376 at 3545.290 kb on + strand, within HP15_3376 at 3545.306 kb on + strand, within HP15_3376 at 3545.314 kb on - strand, within HP15_3376 at 3545.358 kb on - strand, within HP15_3376 at 3545.496 kb on + strand, within HP15_3376 at 3545.504 kb on - strand, within HP15_3376 at 3545.739 kb on - strand, within HP15_3376 at 3545.897 kb on - strand at 3545.897 kb on - strand at 3545.932 kb on + strand at 3545.932 kb on + strand at 3545.940 kb on - strand at 3546.010 kb on - strand at 3546.069 kb on - strand at 3546.131 kb on + strand at 3546.224 kb on - strand at 3546.228 kb on + strand at 3546.318 kb on - strand, within HP15_3377 at 3546.480 kb on + strand, within HP15_3377 at 3546.517 kb on - strand, within HP15_3377 at 3546.580 kb on + strand, within HP15_3377 at 3546.581 kb on - strand, within HP15_3377 at 3546.701 kb on - strand, within HP15_3377 at 3546.856 kb on + strand at 3546.946 kb on - strand at 3546.970 kb on + strand at 3547.002 kb on - strand at 3547.038 kb on + strand at 3547.063 kb on + strand at 3547.092 kb on + strand, within HP15_3378 at 3547.126 kb on + strand, within HP15_3378
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM remove 3,542,324 + HP15_3375 0.65 -1.1 3,542,412 + HP15_3375 0.69 -1.4 3,542,459 - HP15_3375 0.71 +0.3 3,542,483 + HP15_3375 0.72 -1.6 3,542,521 + HP15_3375 0.73 -0.9 3,542,565 - HP15_3375 0.75 +0.0 3,542,639 + HP15_3375 0.78 -3.2 3,542,647 + HP15_3375 0.78 -1.6 3,542,649 + HP15_3375 0.78 -2.5 3,542,657 - HP15_3375 0.79 +0.5 3,542,718 - HP15_3375 0.81 +0.0 3,542,743 + HP15_3375 0.82 -1.1 3,542,749 - HP15_3375 0.83 +0.1 3,542,793 + HP15_3375 0.84 +0.1 3,542,857 + HP15_3375 0.87 -1.5 3,543,140 - -0.3 3,543,161 + -1.4 3,543,169 - +0.3 3,543,178 + -0.5 3,543,248 + -0.3 3,543,248 + +0.3 3,543,248 + +0.0 3,543,256 - +0.4 3,543,349 + +0.3 3,543,374 + +0.4 3,543,516 - +1.9 3,543,551 + +1.1 3,543,583 + +1.5 3,543,591 - +0.6 3,543,591 - +1.9 3,543,591 - +1.0 3,543,655 - HP15_3376 0.12 +1.3 3,543,689 + HP15_3376 0.13 +2.0 3,543,704 + HP15_3376 0.14 +1.4 3,543,709 + HP15_3376 0.14 +1.4 3,543,714 + HP15_3376 0.14 +1.4 3,543,739 + HP15_3376 0.15 +1.1 3,543,742 - HP15_3376 0.15 +1.1 3,543,766 - HP15_3376 0.16 +0.7 3,543,822 + HP15_3376 0.18 +1.4 3,543,822 + HP15_3376 0.18 +1.8 3,543,898 + HP15_3376 0.21 +1.1 3,543,959 + HP15_3376 0.23 +1.5 3,544,052 + HP15_3376 0.26 +1.6 3,544,094 + HP15_3376 0.27 +1.6 3,544,141 + HP15_3376 0.29 +1.3 3,544,210 - HP15_3376 0.32 +1.7 3,544,224 + HP15_3376 0.32 +1.5 3,544,232 - HP15_3376 0.32 +1.4 3,544,318 - HP15_3376 0.35 +1.3 3,544,320 - HP15_3376 0.35 +1.0 3,544,331 - HP15_3376 0.36 +2.0 3,544,455 + HP15_3376 0.40 +1.3 3,544,593 - HP15_3376 0.45 +1.5 3,544,809 - HP15_3376 0.52 +0.3 3,544,809 - HP15_3376 0.52 +0.8 3,544,836 - HP15_3376 0.53 +1.2 3,544,844 - HP15_3376 0.54 +1.0 3,544,915 - HP15_3376 0.56 +0.5 3,544,989 + HP15_3376 0.59 +1.3 3,545,033 + HP15_3376 0.60 +1.1 3,545,062 + HP15_3376 0.61 +1.3 3,545,062 + HP15_3376 0.61 +2.3 3,545,070 - HP15_3376 0.62 +1.2 3,545,177 - HP15_3376 0.65 +1.8 3,545,204 - HP15_3376 0.66 +0.8 3,545,235 + HP15_3376 0.67 +3.4 3,545,250 + HP15_3376 0.68 +1.1 3,545,250 + HP15_3376 0.68 +0.6 3,545,250 + HP15_3376 0.68 +2.6 3,545,258 - HP15_3376 0.68 +1.3 3,545,290 + HP15_3376 0.69 +1.2 3,545,306 + HP15_3376 0.70 +1.5 3,545,314 - HP15_3376 0.70 +1.5 3,545,358 - HP15_3376 0.72 +1.3 3,545,496 + HP15_3376 0.76 +1.6 3,545,504 - HP15_3376 0.77 +1.0 3,545,739 - HP15_3376 0.85 +1.6 3,545,897 - +0.7 3,545,897 - +0.8 3,545,932 + +1.7 3,545,932 + +0.9 3,545,940 - +1.4 3,546,010 - +1.2 3,546,069 - +0.8 3,546,131 + -0.0 3,546,224 - -2.2 3,546,228 + -1.3 3,546,318 - HP15_3377 0.21 -0.1 3,546,480 + HP15_3377 0.47 -0.3 3,546,517 - HP15_3377 0.53 -1.4 3,546,580 + HP15_3377 0.63 +0.8 3,546,581 - HP15_3377 0.63 -1.7 3,546,701 - HP15_3377 0.82 -1.9 3,546,856 + -1.6 3,546,946 - +0.1 3,546,970 + -0.4 3,547,002 - -1.9 3,547,038 + -0.8 3,547,063 + -0.7 3,547,092 + HP15_3378 0.15 -0.9 3,547,126 + HP15_3378 0.23 -0.5
Or see this region's nucleotide sequence