Strain Fitness in Marinobacter adhaerens HP15 around HP15_3193

Experiment: m.b. Aluminum chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3191 and HP15_3192 overlap by 1 nucleotidesHP15_3192 and HP15_3193 overlap by 4 nucleotidesHP15_3193 and HP15_3194 are separated by 27 nucleotidesHP15_3194 and HP15_3195 are separated by 12 nucleotidesHP15_3195 and HP15_3196 are separated by 88 nucleotides HP15_3191: HP15_3191 - ubiquinone/menaquinone biosynthesis methyltransferase UbiE, at 3,346,341 to 3,347,132 _3191 HP15_3192: HP15_3192 - protein containing sterol-binding domain, at 3,347,132 to 3,347,773 _3192 HP15_3193: HP15_3193 - ubiquinone biosynthesis protein UbiB, at 3,347,770 to 3,349,413 _3193 HP15_3194: HP15_3194 - phosphoribosyl-AMP cyclohydrolase, at 3,349,441 to 3,349,857 _3194 HP15_3195: HP15_3195 - phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data), at 3,349,870 to 3,350,199 _3195 HP15_3196: HP15_3196 - twin-arginine translocation protein TatA/E, at 3,350,288 to 3,350,527 _3196 Position (kb) 3347 3348 3349 3350Strain fitness (log2 ratio) -3 -2 -1 0 1at 3347.152 kb on + strandat 3347.171 kb on + strandat 3347.173 kb on + strandat 3347.181 kb on - strandat 3347.279 kb on + strand, within HP15_3192at 3347.284 kb on + strand, within HP15_3192at 3347.284 kb on + strand, within HP15_3192at 3347.767 kb on + strandat 3349.525 kb on + strand, within HP15_3194at 3349.609 kb on + strand, within HP15_3194at 3349.658 kb on + strand, within HP15_3194at 3349.830 kb on + strandat 3349.840 kb on + strandat 3349.851 kb on + strandat 3349.934 kb on + strand, within HP15_3195at 3349.964 kb on - strand, within HP15_3195at 3350.056 kb on - strand, within HP15_3195at 3350.201 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM
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3,347,152 + -2.8
3,347,171 + -1.8
3,347,173 + -2.8
3,347,181 - +0.0
3,347,279 + HP15_3192 0.23 -2.2
3,347,284 + HP15_3192 0.24 -3.6
3,347,284 + HP15_3192 0.24 -1.8
3,347,767 + +0.4
3,349,525 + HP15_3194 0.20 -0.0
3,349,609 + HP15_3194 0.40 +0.5
3,349,658 + HP15_3194 0.52 -1.2
3,349,830 + -0.2
3,349,840 + +0.2
3,349,851 + +0.1
3,349,934 + HP15_3195 0.19 -0.4
3,349,964 - HP15_3195 0.28 +0.3
3,350,056 - HP15_3195 0.56 +0.8
3,350,201 + +0.2

Or see this region's nucleotide sequence