Experiment: m.b. Aluminum chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3190 and HP15_3191 are separated by 125 nucleotides HP15_3191 and HP15_3192 overlap by 1 nucleotides HP15_3192 and HP15_3193 overlap by 4 nucleotides
HP15_3190: HP15_3190 - polyhydroxyalkanoic acid system protein, at 3,345,937 to 3,346,215
_3190
HP15_3191: HP15_3191 - ubiquinone/menaquinone biosynthesis methyltransferase UbiE, at 3,346,341 to 3,347,132
_3191
HP15_3192: HP15_3192 - protein containing sterol-binding domain, at 3,347,132 to 3,347,773
_3192
HP15_3193: HP15_3193 - ubiquinone biosynthesis protein UbiB, at 3,347,770 to 3,349,413
_3193
Position (kb) 3347
3348 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3346.143 kb on - strand, within HP15_3190 at 3346.176 kb on + strand, within HP15_3190 at 3346.269 kb on - strand at 3346.279 kb on + strand at 3347.152 kb on + strand at 3347.171 kb on + strand at 3347.173 kb on + strand at 3347.181 kb on - strand at 3347.279 kb on + strand, within HP15_3192 at 3347.284 kb on + strand, within HP15_3192 at 3347.284 kb on + strand, within HP15_3192 at 3347.767 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM remove 3,346,143 - HP15_3190 0.74 -1.5 3,346,176 + HP15_3190 0.86 -1.5 3,346,269 - -0.9 3,346,279 + +0.6 3,347,152 + -2.8 3,347,171 + -1.8 3,347,173 + -2.8 3,347,181 - +0.0 3,347,279 + HP15_3192 0.23 -2.2 3,347,284 + HP15_3192 0.24 -3.6 3,347,284 + HP15_3192 0.24 -1.8 3,347,767 + +0.4
Or see this region's nucleotide sequence