Strain Fitness in Marinobacter adhaerens HP15 around HP15_3139

Experiment: m.b. Aluminum chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3137 and HP15_3138 overlap by 4 nucleotidesHP15_3138 and HP15_3139 overlap by 1 nucleotidesHP15_3139 and HP15_3140 overlap by 4 nucleotides HP15_3137: HP15_3137 - pyrroloquinoline quinone biosynthesis protein PqqE, at 3,290,675 to 3,291,811 _3137 HP15_3138: HP15_3138 - coenzyme PQQ synthesis D, at 3,291,808 to 3,292,083 _3138 HP15_3139: HP15_3139 - pyrroloquinoline quinone biosynthesis protein PqqC, at 3,292,083 to 3,292,838 _3139 HP15_3140: HP15_3140 - pyrroloquinoline quinone biosynthesis protein PqqB, at 3,292,835 to 3,293,764 _3140 Position (kb) 3292 3293Strain fitness (log2 ratio) -1 0 1 2at 3291.091 kb on + strand, within HP15_3137at 3291.164 kb on + strand, within HP15_3137at 3291.188 kb on - strand, within HP15_3137at 3291.341 kb on + strand, within HP15_3137at 3291.349 kb on - strand, within HP15_3137at 3291.436 kb on + strand, within HP15_3137at 3291.506 kb on + strand, within HP15_3137at 3291.523 kb on + strand, within HP15_3137at 3291.531 kb on - strand, within HP15_3137at 3291.541 kb on - strand, within HP15_3137at 3291.551 kb on - strand, within HP15_3137at 3291.551 kb on - strand, within HP15_3137at 3291.673 kb on + strand, within HP15_3137at 3291.679 kb on - strand, within HP15_3137at 3291.681 kb on - strand, within HP15_3137at 3291.681 kb on - strand, within HP15_3137at 3291.806 kb on + strandat 3291.824 kb on - strandat 3291.892 kb on + strand, within HP15_3138at 3291.942 kb on - strand, within HP15_3138at 3291.992 kb on + strand, within HP15_3138at 3292.002 kb on + strand, within HP15_3138at 3292.088 kb on - strandat 3292.088 kb on - strandat 3292.173 kb on + strand, within HP15_3139at 3292.182 kb on - strand, within HP15_3139at 3292.182 kb on - strand, within HP15_3139at 3292.218 kb on + strand, within HP15_3139at 3292.320 kb on + strand, within HP15_3139at 3292.368 kb on - strand, within HP15_3139at 3292.471 kb on + strand, within HP15_3139at 3292.479 kb on - strand, within HP15_3139at 3292.502 kb on + strand, within HP15_3139at 3292.539 kb on + strand, within HP15_3139at 3292.609 kb on - strand, within HP15_3139at 3292.663 kb on + strand, within HP15_3139at 3292.717 kb on - strand, within HP15_3139at 3292.738 kb on + strand, within HP15_3139at 3292.827 kb on - strandat 3292.833 kb on + strandat 3292.909 kb on + strandat 3292.936 kb on + strand, within HP15_3140at 3293.024 kb on - strand, within HP15_3140at 3293.031 kb on + strand, within HP15_3140at 3293.067 kb on - strand, within HP15_3140at 3293.104 kb on + strand, within HP15_3140at 3293.220 kb on - strand, within HP15_3140at 3293.220 kb on - strand, within HP15_3140at 3293.220 kb on - strand, within HP15_3140at 3293.230 kb on + strand, within HP15_3140at 3293.365 kb on - strand, within HP15_3140at 3293.408 kb on + strand, within HP15_3140at 3293.484 kb on - strand, within HP15_3140at 3293.564 kb on + strand, within HP15_3140at 3293.660 kb on - strand, within HP15_3140at 3293.802 kb on - strandat 3293.802 kb on - strandat 3293.817 kb on - strandat 3293.833 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM
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3,291,091 + HP15_3137 0.37 +0.3
3,291,164 + HP15_3137 0.43 +0.1
3,291,188 - HP15_3137 0.45 +0.3
3,291,341 + HP15_3137 0.59 +0.6
3,291,349 - HP15_3137 0.59 +0.4
3,291,436 + HP15_3137 0.67 +0.5
3,291,506 + HP15_3137 0.73 -0.5
3,291,523 + HP15_3137 0.75 +0.3
3,291,531 - HP15_3137 0.75 +2.0
3,291,541 - HP15_3137 0.76 +0.3
3,291,551 - HP15_3137 0.77 +0.5
3,291,551 - HP15_3137 0.77 +0.6
3,291,673 + HP15_3137 0.88 +0.7
3,291,679 - HP15_3137 0.88 -1.7
3,291,681 - HP15_3137 0.88 +1.4
3,291,681 - HP15_3137 0.88 +0.3
3,291,806 + +0.2
3,291,824 - +0.6
3,291,892 + HP15_3138 0.30 -0.5
3,291,942 - HP15_3138 0.49 -0.7
3,291,992 + HP15_3138 0.67 +0.3
3,292,002 + HP15_3138 0.70 +0.2
3,292,088 - +0.2
3,292,088 - +0.1
3,292,173 + HP15_3139 0.12 +0.4
3,292,182 - HP15_3139 0.13 +0.2
3,292,182 - HP15_3139 0.13 +0.1
3,292,218 + HP15_3139 0.18 +0.7
3,292,320 + HP15_3139 0.31 +1.8
3,292,368 - HP15_3139 0.38 +1.1
3,292,471 + HP15_3139 0.51 +0.1
3,292,479 - HP15_3139 0.52 +1.5
3,292,502 + HP15_3139 0.55 +0.8
3,292,539 + HP15_3139 0.60 +0.4
3,292,609 - HP15_3139 0.70 +0.1
3,292,663 + HP15_3139 0.77 +1.4
3,292,717 - HP15_3139 0.84 +0.7
3,292,738 + HP15_3139 0.87 +0.7
3,292,827 - +0.1
3,292,833 + -0.2
3,292,909 + -0.0
3,292,936 + HP15_3140 0.11 +0.2
3,293,024 - HP15_3140 0.20 +1.0
3,293,031 + HP15_3140 0.21 +0.1
3,293,067 - HP15_3140 0.25 -0.1
3,293,104 + HP15_3140 0.29 +0.1
3,293,220 - HP15_3140 0.41 -0.1
3,293,220 - HP15_3140 0.41 +0.2
3,293,220 - HP15_3140 0.41 +0.3
3,293,230 + HP15_3140 0.42 +0.2
3,293,365 - HP15_3140 0.57 +1.3
3,293,408 + HP15_3140 0.62 +1.0
3,293,484 - HP15_3140 0.70 +0.5
3,293,564 + HP15_3140 0.78 +0.4
3,293,660 - HP15_3140 0.89 +1.9
3,293,802 - +0.1
3,293,802 - +0.3
3,293,817 - +0.2
3,293,833 + +0.7

Or see this region's nucleotide sequence