Strain Fitness in Marinobacter adhaerens HP15 around HP15_3057

Experiment: m.b. Aluminum chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3056 and HP15_3057 overlap by 1 nucleotidesHP15_3057 and HP15_3058 are separated by 6 nucleotidesHP15_3058 and HP15_3059 are separated by 9 nucleotides HP15_3056: HP15_3056 - high-affinity branched-chain amino acid ABC transporter, permease protein, at 3,207,042 to 3,207,965 _3056 HP15_3057: HP15_3057 - leucine/isoleucine/valine transporter permease subunit, at 3,207,965 to 3,209,236 _3057 HP15_3058: HP15_3058 - leucine/isoleucine/valine transporter ATP-binding subunit, at 3,209,243 to 3,209,998 _3058 HP15_3059: HP15_3059 - high-affinity branched-chain amino acid ABC transporter, ATP-binding protein, at 3,210,008 to 3,210,709 _3059 Position (kb) 3207 3208 3209 3210Strain fitness (log2 ratio) -2 -1 0 1 2at 3207.021 kb on + strandat 3207.050 kb on - strandat 3207.100 kb on + strandat 3207.277 kb on - strand, within HP15_3056at 3207.317 kb on - strand, within HP15_3056at 3207.370 kb on - strand, within HP15_3056at 3207.492 kb on + strand, within HP15_3056at 3207.507 kb on - strand, within HP15_3056at 3207.557 kb on + strand, within HP15_3056at 3207.709 kb on - strand, within HP15_3056at 3207.716 kb on - strand, within HP15_3056at 3207.772 kb on + strand, within HP15_3056at 3207.868 kb on - strand, within HP15_3056at 3207.868 kb on - strand, within HP15_3056at 3207.887 kb on - strandat 3208.015 kb on + strandat 3208.015 kb on + strandat 3208.015 kb on + strandat 3208.057 kb on + strandat 3208.065 kb on + strandat 3208.083 kb on - strandat 3208.156 kb on + strand, within HP15_3057at 3208.164 kb on - strand, within HP15_3057at 3208.166 kb on + strand, within HP15_3057at 3208.279 kb on + strand, within HP15_3057at 3208.287 kb on - strand, within HP15_3057at 3208.355 kb on + strand, within HP15_3057at 3208.358 kb on - strand, within HP15_3057at 3208.358 kb on - strand, within HP15_3057at 3208.367 kb on + strand, within HP15_3057at 3208.393 kb on - strand, within HP15_3057at 3208.416 kb on - strand, within HP15_3057at 3208.431 kb on + strand, within HP15_3057at 3208.439 kb on - strand, within HP15_3057at 3208.458 kb on - strand, within HP15_3057at 3208.478 kb on - strand, within HP15_3057at 3208.488 kb on - strand, within HP15_3057at 3208.520 kb on - strand, within HP15_3057at 3208.598 kb on + strand, within HP15_3057at 3208.656 kb on + strand, within HP15_3057at 3208.656 kb on + strand, within HP15_3057at 3208.840 kb on - strand, within HP15_3057at 3208.843 kb on + strand, within HP15_3057at 3208.843 kb on + strand, within HP15_3057at 3208.889 kb on + strand, within HP15_3057at 3208.961 kb on + strand, within HP15_3057at 3208.976 kb on - strand, within HP15_3057at 3208.976 kb on - strand, within HP15_3057at 3208.976 kb on - strand, within HP15_3057at 3208.976 kb on - strand, within HP15_3057at 3209.016 kb on - strand, within HP15_3057at 3209.148 kb on - strandat 3209.178 kb on - strandat 3209.178 kb on - strandat 3209.484 kb on + strand, within HP15_3058at 3209.631 kb on - strand, within HP15_3058at 3209.649 kb on + strand, within HP15_3058at 3209.649 kb on + strand, within HP15_3058at 3209.719 kb on - strand, within HP15_3058at 3209.868 kb on + strand, within HP15_3058at 3209.868 kb on + strand, within HP15_3058at 3209.992 kb on + strandat 3210.000 kb on - strandat 3210.007 kb on - strandat 3210.025 kb on + strandat 3210.053 kb on + strandat 3210.136 kb on + strand, within HP15_3059at 3210.218 kb on + strand, within HP15_3059

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM
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3,207,021 + +0.5
3,207,050 - +0.4
3,207,100 + +0.7
3,207,277 - HP15_3056 0.25 +0.6
3,207,317 - HP15_3056 0.30 +0.0
3,207,370 - HP15_3056 0.35 +0.4
3,207,492 + HP15_3056 0.49 -0.3
3,207,507 - HP15_3056 0.50 -0.2
3,207,557 + HP15_3056 0.56 +0.5
3,207,709 - HP15_3056 0.72 +0.3
3,207,716 - HP15_3056 0.73 -0.1
3,207,772 + HP15_3056 0.79 +0.7
3,207,868 - HP15_3056 0.89 +1.6
3,207,868 - HP15_3056 0.89 -0.0
3,207,887 - +0.5
3,208,015 + -0.1
3,208,015 + +1.9
3,208,015 + +0.4
3,208,057 + +0.7
3,208,065 + +0.0
3,208,083 - +0.6
3,208,156 + HP15_3057 0.15 +0.3
3,208,164 - HP15_3057 0.16 +0.2
3,208,166 + HP15_3057 0.16 +0.8
3,208,279 + HP15_3057 0.25 +0.2
3,208,287 - HP15_3057 0.25 +0.8
3,208,355 + HP15_3057 0.31 +0.4
3,208,358 - HP15_3057 0.31 +0.5
3,208,358 - HP15_3057 0.31 +0.5
3,208,367 + HP15_3057 0.32 +0.1
3,208,393 - HP15_3057 0.34 +0.6
3,208,416 - HP15_3057 0.35 +0.2
3,208,431 + HP15_3057 0.37 +0.4
3,208,439 - HP15_3057 0.37 +0.6
3,208,458 - HP15_3057 0.39 +0.8
3,208,478 - HP15_3057 0.40 +0.6
3,208,488 - HP15_3057 0.41 +0.9
3,208,520 - HP15_3057 0.44 +0.3
3,208,598 + HP15_3057 0.50 +1.7
3,208,656 + HP15_3057 0.54 +0.1
3,208,656 + HP15_3057 0.54 +0.0
3,208,840 - HP15_3057 0.69 +1.0
3,208,843 + HP15_3057 0.69 +0.9
3,208,843 + HP15_3057 0.69 -0.3
3,208,889 + HP15_3057 0.73 +0.8
3,208,961 + HP15_3057 0.78 +0.3
3,208,976 - HP15_3057 0.79 +0.4
3,208,976 - HP15_3057 0.79 +0.7
3,208,976 - HP15_3057 0.79 +0.5
3,208,976 - HP15_3057 0.79 +0.5
3,209,016 - HP15_3057 0.83 +0.6
3,209,148 - +0.5
3,209,178 - +0.1
3,209,178 - +1.3
3,209,484 + HP15_3058 0.32 -0.1
3,209,631 - HP15_3058 0.51 +0.4
3,209,649 + HP15_3058 0.54 +0.7
3,209,649 + HP15_3058 0.54 +0.8
3,209,719 - HP15_3058 0.63 -0.1
3,209,868 + HP15_3058 0.83 +0.7
3,209,868 + HP15_3058 0.83 +1.4
3,209,992 + +0.6
3,210,000 - +0.2
3,210,007 - -0.2
3,210,025 + +1.1
3,210,053 + +0.2
3,210,136 + HP15_3059 0.18 -0.2
3,210,218 + HP15_3059 0.30 -1.8

Or see this region's nucleotide sequence