Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03000 and PGA1_c03010 are separated by 278 nucleotides PGA1_c03010 and PGA1_c03020 overlap by 1 nucleotides PGA1_c03020 and PGA1_c03030 are separated by 5 nucleotides PGA1_c03030 and PGA1_c03040 overlap by 4 nucleotides PGA1_c03040 and PGA1_c03050 are separated by 1 nucleotides
PGA1_c03000: PGA1_c03000 - YHS domain., at 288,655 to 289,128
_c03000
PGA1_c03010: PGA1_c03010 - glycerol-3-phosphate acyltransferase PlsY, at 289,407 to 290,012
_c03010
PGA1_c03020: PGA1_c03020 - dihydroorotase PyrC, at 290,012 to 291,322
_c03020
PGA1_c03030: PGA1_c03030 - hypothetical protein, at 291,328 to 291,861
_c03030
PGA1_c03040: PGA1_c03040 - hypothetical protein, at 291,858 to 292,241
_c03040
PGA1_c03050: PGA1_c03050 - hypothetical protein, at 292,243 to 292,800
_c03050
Position (kb) 290
291
292 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 289.013 kb on - strand, within PGA1_c03000 at 289.014 kb on - strand, within PGA1_c03000 at 289.036 kb on - strand, within PGA1_c03000 at 289.065 kb on + strand, within PGA1_c03000 at 289.065 kb on + strand, within PGA1_c03000 at 289.070 kb on + strand, within PGA1_c03000 at 289.073 kb on - strand, within PGA1_c03000 at 289.073 kb on - strand, within PGA1_c03000 at 289.073 kb on - strand, within PGA1_c03000 at 289.088 kb on - strand at 289.097 kb on + strand at 289.130 kb on + strand at 289.131 kb on + strand at 289.138 kb on - strand at 289.139 kb on - strand at 289.158 kb on - strand at 289.169 kb on + strand at 289.169 kb on + strand at 289.194 kb on - strand at 289.233 kb on - strand at 289.243 kb on - strand at 289.278 kb on + strand at 289.333 kb on - strand at 289.352 kb on - strand at 289.413 kb on - strand at 290.017 kb on - strand at 290.065 kb on - strand at 290.135 kb on + strand at 290.135 kb on + strand at 290.145 kb on + strand, within PGA1_c03020 at 290.180 kb on + strand, within PGA1_c03020 at 290.193 kb on - strand, within PGA1_c03020 at 290.198 kb on - strand, within PGA1_c03020 at 290.306 kb on - strand, within PGA1_c03020 at 290.336 kb on + strand, within PGA1_c03020 at 290.379 kb on - strand, within PGA1_c03020 at 290.409 kb on + strand, within PGA1_c03020 at 290.417 kb on - strand, within PGA1_c03020 at 290.417 kb on - strand, within PGA1_c03020 at 290.437 kb on - strand, within PGA1_c03020 at 290.452 kb on + strand, within PGA1_c03020 at 290.467 kb on + strand, within PGA1_c03020 at 290.486 kb on + strand, within PGA1_c03020 at 290.572 kb on + strand, within PGA1_c03020 at 290.583 kb on + strand, within PGA1_c03020 at 290.583 kb on + strand, within PGA1_c03020 at 290.583 kb on + strand, within PGA1_c03020 at 290.591 kb on - strand, within PGA1_c03020 at 290.734 kb on + strand, within PGA1_c03020 at 290.908 kb on - strand, within PGA1_c03020 at 290.924 kb on - strand, within PGA1_c03020 at 291.003 kb on + strand, within PGA1_c03020 at 291.013 kb on - strand, within PGA1_c03020 at 291.013 kb on - strand, within PGA1_c03020 at 291.093 kb on + strand, within PGA1_c03020 at 291.093 kb on + strand, within PGA1_c03020 at 291.094 kb on + strand, within PGA1_c03020 at 291.100 kb on + strand, within PGA1_c03020 at 291.118 kb on - strand, within PGA1_c03020 at 291.157 kb on + strand, within PGA1_c03020 at 291.165 kb on - strand, within PGA1_c03020 at 291.228 kb on + strand at 291.236 kb on - strand at 291.248 kb on + strand at 291.256 kb on - strand at 291.313 kb on - strand at 291.313 kb on - strand at 291.317 kb on + strand at 291.344 kb on + strand at 291.349 kb on + strand at 291.349 kb on + strand at 291.349 kb on + strand at 291.349 kb on + strand at 291.349 kb on + strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.370 kb on + strand at 291.374 kb on - strand at 291.425 kb on + strand, within PGA1_c03030 at 291.433 kb on - strand, within PGA1_c03030 at 291.487 kb on - strand, within PGA1_c03030 at 291.487 kb on - strand, within PGA1_c03030 at 291.511 kb on - strand, within PGA1_c03030 at 291.515 kb on + strand, within PGA1_c03030 at 291.523 kb on - strand, within PGA1_c03030 at 291.528 kb on + strand, within PGA1_c03030 at 291.576 kb on + strand, within PGA1_c03030 at 291.616 kb on + strand, within PGA1_c03030 at 291.616 kb on + strand, within PGA1_c03030 at 291.624 kb on - strand, within PGA1_c03030 at 291.650 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.720 kb on + strand, within PGA1_c03030 at 291.728 kb on - strand, within PGA1_c03030 at 291.728 kb on - strand, within PGA1_c03030 at 291.731 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.772 kb on + strand, within PGA1_c03030 at 291.772 kb on + strand, within PGA1_c03030 at 291.780 kb on - strand, within PGA1_c03030 at 291.780 kb on - strand, within PGA1_c03030 at 291.784 kb on + strand, within PGA1_c03030 at 291.806 kb on - strand, within PGA1_c03030 at 291.825 kb on + strand at 291.851 kb on + strand at 291.851 kb on + strand at 291.851 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.859 kb on - strand at 291.859 kb on - strand at 291.863 kb on + strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.893 kb on + strand at 291.898 kb on + strand, within PGA1_c03040 at 291.898 kb on + strand, within PGA1_c03040 at 291.906 kb on - strand, within PGA1_c03040 at 291.918 kb on - strand, within PGA1_c03040 at 291.924 kb on + strand, within PGA1_c03040 at 291.932 kb on + strand, within PGA1_c03040 at 291.940 kb on - strand, within PGA1_c03040 at 291.963 kb on - strand, within PGA1_c03040 at 291.968 kb on - strand, within PGA1_c03040 at 292.007 kb on - strand, within PGA1_c03040 at 292.063 kb on + strand, within PGA1_c03040 at 292.093 kb on - strand, within PGA1_c03040 at 292.093 kb on - strand, within PGA1_c03040 at 292.117 kb on + strand, within PGA1_c03040 at 292.117 kb on + strand, within PGA1_c03040 at 292.183 kb on + strand, within PGA1_c03040 at 292.214 kb on + strand at 292.239 kb on - strand at 292.273 kb on + strand at 292.276 kb on - strand at 292.276 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 289,013 - PGA1_c03000 0.76 -0.1 289,014 - PGA1_c03000 0.76 +1.1 289,036 - PGA1_c03000 0.80 +0.1 289,065 + PGA1_c03000 0.86 -0.8 289,065 + PGA1_c03000 0.86 +0.0 289,070 + PGA1_c03000 0.88 -0.7 289,073 - PGA1_c03000 0.88 -0.3 289,073 - PGA1_c03000 0.88 -1.2 289,073 - PGA1_c03000 0.88 +0.1 289,088 - +0.7 289,097 + -0.2 289,130 + -0.2 289,131 + -0.6 289,138 - +0.6 289,139 - +0.5 289,158 - +0.8 289,169 + +0.7 289,169 + -1.3 289,194 - -0.2 289,233 - -0.4 289,243 - -0.3 289,278 + +0.5 289,333 - -0.5 289,352 - +0.4 289,413 - +0.8 290,017 - -0.2 290,065 - -3.5 290,135 + -3.5 290,135 + -2.6 290,145 + PGA1_c03020 0.10 -1.0 290,180 + PGA1_c03020 0.13 -3.4 290,193 - PGA1_c03020 0.14 -3.1 290,198 - PGA1_c03020 0.14 -1.8 290,306 - PGA1_c03020 0.22 -3.1 290,336 + PGA1_c03020 0.25 -1.9 290,379 - PGA1_c03020 0.28 -3.7 290,409 + PGA1_c03020 0.30 -4.2 290,417 - PGA1_c03020 0.31 -2.3 290,417 - PGA1_c03020 0.31 -2.2 290,437 - PGA1_c03020 0.32 -3.7 290,452 + PGA1_c03020 0.34 -3.5 290,467 + PGA1_c03020 0.35 -3.2 290,486 + PGA1_c03020 0.36 -4.4 290,572 + PGA1_c03020 0.43 -2.9 290,583 + PGA1_c03020 0.44 -4.2 290,583 + PGA1_c03020 0.44 -2.5 290,583 + PGA1_c03020 0.44 -1.1 290,591 - PGA1_c03020 0.44 -3.8 290,734 + PGA1_c03020 0.55 -1.1 290,908 - PGA1_c03020 0.68 -3.4 290,924 - PGA1_c03020 0.70 -2.7 291,003 + PGA1_c03020 0.76 -2.5 291,013 - PGA1_c03020 0.76 -2.1 291,013 - PGA1_c03020 0.76 -2.3 291,093 + PGA1_c03020 0.82 -2.7 291,093 + PGA1_c03020 0.82 -3.5 291,094 + PGA1_c03020 0.83 -2.5 291,100 + PGA1_c03020 0.83 -2.4 291,118 - PGA1_c03020 0.84 -2.5 291,157 + PGA1_c03020 0.87 -3.0 291,165 - PGA1_c03020 0.88 -4.2 291,228 + -3.1 291,236 - -2.1 291,248 + -2.5 291,256 - -3.7 291,313 - -2.8 291,313 - -1.9 291,317 + -1.7 291,344 + -1.5 291,349 + -1.2 291,349 + +0.4 291,349 + +0.7 291,349 + -1.1 291,349 + +0.2 291,357 - +1.6 291,357 - +0.1 291,357 - -0.9 291,357 - +0.8 291,357 - -1.3 291,357 - +0.9 291,357 - +0.8 291,357 - +0.5 291,357 - +0.7 291,357 - +1.1 291,370 + +0.4 291,374 - -0.1 291,425 + PGA1_c03030 0.18 +0.5 291,433 - PGA1_c03030 0.20 +0.0 291,487 - PGA1_c03030 0.30 +0.2 291,487 - PGA1_c03030 0.30 +0.4 291,511 - PGA1_c03030 0.34 -0.6 291,515 + PGA1_c03030 0.35 -0.3 291,523 - PGA1_c03030 0.37 -0.2 291,528 + PGA1_c03030 0.37 -1.2 291,576 + PGA1_c03030 0.46 -1.5 291,616 + PGA1_c03030 0.54 -0.7 291,616 + PGA1_c03030 0.54 -0.6 291,624 - PGA1_c03030 0.55 +0.4 291,650 + PGA1_c03030 0.60 -0.1 291,710 + PGA1_c03030 0.72 -2.4 291,710 + PGA1_c03030 0.72 +0.1 291,710 + PGA1_c03030 0.72 -0.3 291,710 + PGA1_c03030 0.72 +0.3 291,710 + PGA1_c03030 0.72 +0.1 291,710 + PGA1_c03030 0.72 +1.7 291,710 + PGA1_c03030 0.72 -1.2 291,710 + PGA1_c03030 0.72 -0.3 291,710 + PGA1_c03030 0.72 -0.3 291,710 + PGA1_c03030 0.72 -1.4 291,710 + PGA1_c03030 0.72 +0.2 291,718 - PGA1_c03030 0.73 -1.6 291,718 - PGA1_c03030 0.73 -0.2 291,718 - PGA1_c03030 0.73 -0.0 291,718 - PGA1_c03030 0.73 -0.7 291,718 - PGA1_c03030 0.73 +0.1 291,718 - PGA1_c03030 0.73 -0.2 291,720 + PGA1_c03030 0.73 +0.2 291,728 - PGA1_c03030 0.75 +0.2 291,728 - PGA1_c03030 0.75 +0.5 291,731 + PGA1_c03030 0.75 +0.1 291,752 + PGA1_c03030 0.79 -0.8 291,752 + PGA1_c03030 0.79 -0.1 291,752 + PGA1_c03030 0.79 +0.0 291,752 + PGA1_c03030 0.79 -1.2 291,752 + PGA1_c03030 0.79 -1.3 291,752 + PGA1_c03030 0.79 -0.6 291,760 - PGA1_c03030 0.81 -0.4 291,760 - PGA1_c03030 0.81 -0.4 291,760 - PGA1_c03030 0.81 -0.6 291,760 - PGA1_c03030 0.81 -0.4 291,760 - PGA1_c03030 0.81 -0.1 291,760 - PGA1_c03030 0.81 +0.2 291,760 - PGA1_c03030 0.81 -0.4 291,760 - PGA1_c03030 0.81 -0.3 291,760 - PGA1_c03030 0.81 -0.4 291,760 - PGA1_c03030 0.81 +0.5 291,760 - PGA1_c03030 0.81 -0.3 291,760 - PGA1_c03030 0.81 +0.7 291,760 - PGA1_c03030 0.81 -0.1 291,760 - PGA1_c03030 0.81 -0.5 291,762 + PGA1_c03030 0.81 +0.7 291,762 + PGA1_c03030 0.81 -0.2 291,762 + PGA1_c03030 0.81 -0.3 291,762 + PGA1_c03030 0.81 -0.9 291,762 + PGA1_c03030 0.81 -0.3 291,762 + PGA1_c03030 0.81 -1.7 291,762 + PGA1_c03030 0.81 -0.2 291,762 + PGA1_c03030 0.81 +0.9 291,770 - PGA1_c03030 0.83 +0.1 291,770 - PGA1_c03030 0.83 -0.1 291,770 - PGA1_c03030 0.83 -0.3 291,770 - PGA1_c03030 0.83 +0.7 291,770 - PGA1_c03030 0.83 -1.6 291,770 - PGA1_c03030 0.83 -0.5 291,772 + PGA1_c03030 0.83 +0.2 291,772 + PGA1_c03030 0.83 +0.7 291,780 - PGA1_c03030 0.85 -1.7 291,780 - PGA1_c03030 0.85 +0.7 291,784 + PGA1_c03030 0.85 -1.3 291,806 - PGA1_c03030 0.90 +0.1 291,825 + -0.2 291,851 + -0.1 291,851 + +0.6 291,851 + -0.1 291,856 + -0.3 291,856 + -0.4 291,856 + -0.7 291,856 + +0.3 291,856 + +0.0 291,856 + -0.2 291,859 - +0.8 291,859 - +0.6 291,863 + +0.4 291,864 - +0.1 291,864 - -0.2 291,864 - -1.3 291,864 - +0.3 291,864 - -0.8 291,864 - +0.4 291,864 - -0.5 291,864 - -0.7 291,864 - -0.3 291,864 - -0.8 291,893 + -0.6 291,898 + PGA1_c03040 0.10 +0.4 291,898 + PGA1_c03040 0.10 -0.1 291,906 - PGA1_c03040 0.12 +0.1 291,918 - PGA1_c03040 0.16 +0.1 291,924 + PGA1_c03040 0.17 -0.4 291,932 + PGA1_c03040 0.19 -0.4 291,940 - PGA1_c03040 0.21 +0.2 291,963 - PGA1_c03040 0.27 +0.3 291,968 - PGA1_c03040 0.29 +1.5 292,007 - PGA1_c03040 0.39 -0.1 292,063 + PGA1_c03040 0.53 -0.3 292,093 - PGA1_c03040 0.61 +1.1 292,093 - PGA1_c03040 0.61 +0.9 292,117 + PGA1_c03040 0.67 -0.1 292,117 + PGA1_c03040 0.67 +0.4 292,183 + PGA1_c03040 0.85 -3.2 292,214 + -0.0 292,239 - +0.4 292,273 + +0.4 292,276 - +1.1 292,276 - -1.1
Or see this region's nucleotide sequence