Strain Fitness in Marinobacter adhaerens HP15 around HP15_2186

Experiment: m.b. Aluminum chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2184 and HP15_2185 are separated by 76 nucleotidesHP15_2185 and HP15_2186 are separated by 204 nucleotidesHP15_2186 and HP15_tRNA38 are separated by 222 nucleotidesHP15_tRNA38 and HP15_tRNA39 are separated by 79 nucleotidesHP15_tRNA39 and HP15_tRNA40 are separated by 75 nucleotidesHP15_tRNA40 and HP15_tRNA41 are separated by 33 nucleotidesHP15_tRNA41 and HP15_2187 are separated by 189 nucleotides HP15_2184: HP15_2184 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 2,297,994 to 2,299,277 _2184 HP15_2185: HP15_2185 - ATP-dependent Clp protease, proteolytic subunit ClpP, at 2,299,354 to 2,299,959 _2185 HP15_2186: HP15_2186 - trigger factor, at 2,300,164 to 2,301,468 _2186 HP15_tRNA38: HP15_tRNA38 - tRNA-Leu, at 2,301,691 to 2,301,775 _tRNA38 HP15_tRNA39: HP15_tRNA39 - tRNA-His, at 2,301,855 to 2,301,930 _tRNA39 HP15_tRNA40: HP15_tRNA40 - tRNA-Arg, at 2,302,006 to 2,302,082 _tRNA40 HP15_tRNA41: HP15_tRNA41 - tRNA-Pro, at 2,302,116 to 2,302,192 _tRNA41 HP15_2187: HP15_2187 - methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase, at 2,302,382 to 2,303,284 _2187 Position (kb) 2300 2301 2302Strain fitness (log2 ratio) -1 0 1 2at 2300.018 kb on - strandat 2300.240 kb on - strandat 2300.311 kb on - strand, within HP15_2186at 2300.412 kb on + strand, within HP15_2186at 2300.422 kb on - strand, within HP15_2186at 2300.587 kb on - strand, within HP15_2186at 2300.696 kb on + strand, within HP15_2186at 2300.803 kb on + strand, within HP15_2186at 2300.811 kb on - strand, within HP15_2186at 2300.839 kb on + strand, within HP15_2186at 2301.236 kb on + strand, within HP15_2186at 2301.237 kb on + strand, within HP15_2186at 2301.239 kb on + strand, within HP15_2186at 2301.293 kb on + strand, within HP15_2186at 2301.605 kb on - strandat 2301.630 kb on + strandat 2301.695 kb on - strandat 2302.322 kb on + strandat 2302.330 kb on - strandat 2302.337 kb on + strandat 2302.345 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM
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2,300,018 - +1.1
2,300,240 - +1.2
2,300,311 - HP15_2186 0.11 +1.5
2,300,412 + HP15_2186 0.19 +0.9
2,300,422 - HP15_2186 0.20 +1.3
2,300,587 - HP15_2186 0.32 +0.0
2,300,696 + HP15_2186 0.41 +1.2
2,300,803 + HP15_2186 0.49 +1.2
2,300,811 - HP15_2186 0.50 +0.7
2,300,839 + HP15_2186 0.52 +2.1
2,301,236 + HP15_2186 0.82 +1.8
2,301,237 + HP15_2186 0.82 +1.8
2,301,239 + HP15_2186 0.82 +0.8
2,301,293 + HP15_2186 0.87 +1.1
2,301,605 - -0.3
2,301,630 + +0.1
2,301,695 - +0.7
2,302,322 + +0.4
2,302,330 - -0.5
2,302,337 + -0.3
2,302,345 - -1.4

Or see this region's nucleotide sequence