Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02290 and PGA1_c02300 overlap by 8 nucleotides PGA1_c02300 and PGA1_c02310 overlap by 4 nucleotides PGA1_c02310 and PGA1_c02320 are separated by 35 nucleotides
PGA1_c02290: PGA1_c02290 - putative NAD dependent epimerase/dehydratase, at 205,680 to 206,477
_c02290
PGA1_c02300: PGA1_c02300 - putative glycosyl transferase, at 206,470 to 207,246
_c02300
PGA1_c02310: PGA1_c02310 - putative pyridoxal-phosphate-dependent aminotransferase, at 207,243 to 208,439
_c02310
PGA1_c02320: PGA1_c02320 - GDP-mannose 4,6-dehydratase Gmd, at 208,475 to 209,608
_c02320
Position (kb) 207
208
209 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 206.270 kb on + strand, within PGA1_c02290 at 206.270 kb on + strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.306 kb on + strand, within PGA1_c02290 at 206.319 kb on + strand, within PGA1_c02290 at 206.436 kb on - strand at 206.441 kb on - strand at 206.445 kb on - strand at 206.448 kb on + strand at 206.449 kb on + strand at 206.502 kb on + strand at 206.523 kb on + strand at 206.526 kb on - strand at 206.531 kb on - strand at 206.531 kb on - strand at 206.538 kb on - strand at 206.571 kb on + strand, within PGA1_c02300 at 206.575 kb on - strand, within PGA1_c02300 at 206.586 kb on + strand, within PGA1_c02300 at 206.586 kb on + strand, within PGA1_c02300 at 206.600 kb on + strand, within PGA1_c02300 at 206.603 kb on + strand, within PGA1_c02300 at 206.608 kb on - strand, within PGA1_c02300 at 206.608 kb on - strand, within PGA1_c02300 at 206.681 kb on + strand, within PGA1_c02300 at 206.710 kb on - strand, within PGA1_c02300 at 206.727 kb on + strand, within PGA1_c02300 at 206.729 kb on + strand, within PGA1_c02300 at 206.729 kb on + strand, within PGA1_c02300 at 206.771 kb on + strand, within PGA1_c02300 at 206.778 kb on + strand, within PGA1_c02300 at 206.802 kb on - strand, within PGA1_c02300 at 206.803 kb on - strand, within PGA1_c02300 at 206.803 kb on - strand, within PGA1_c02300 at 206.808 kb on - strand, within PGA1_c02300 at 206.810 kb on + strand, within PGA1_c02300 at 206.810 kb on + strand, within PGA1_c02300 at 206.818 kb on - strand, within PGA1_c02300 at 206.841 kb on + strand, within PGA1_c02300 at 206.844 kb on + strand, within PGA1_c02300 at 206.903 kb on - strand, within PGA1_c02300 at 206.913 kb on - strand, within PGA1_c02300 at 206.913 kb on - strand, within PGA1_c02300 at 206.928 kb on + strand, within PGA1_c02300 at 206.944 kb on + strand, within PGA1_c02300 at 206.947 kb on - strand, within PGA1_c02300 at 206.954 kb on + strand, within PGA1_c02300 at 206.987 kb on - strand, within PGA1_c02300 at 206.998 kb on + strand, within PGA1_c02300 at 206.998 kb on + strand, within PGA1_c02300 at 207.033 kb on - strand, within PGA1_c02300 at 207.065 kb on + strand, within PGA1_c02300 at 207.065 kb on + strand, within PGA1_c02300 at 207.073 kb on - strand, within PGA1_c02300 at 207.073 kb on - strand, within PGA1_c02300 at 207.073 kb on - strand, within PGA1_c02300 at 207.122 kb on - strand, within PGA1_c02300 at 207.179 kb on + strand at 207.187 kb on - strand at 207.187 kb on - strand at 207.200 kb on + strand at 207.208 kb on - strand at 207.231 kb on - strand at 207.243 kb on - strand at 207.274 kb on + strand at 207.274 kb on + strand at 207.282 kb on - strand at 207.282 kb on - strand at 207.304 kb on + strand at 207.355 kb on - strand at 207.398 kb on - strand, within PGA1_c02310 at 207.398 kb on - strand, within PGA1_c02310 at 207.408 kb on - strand, within PGA1_c02310 at 207.414 kb on + strand, within PGA1_c02310 at 207.425 kb on + strand, within PGA1_c02310 at 207.443 kb on + strand, within PGA1_c02310 at 207.494 kb on + strand, within PGA1_c02310 at 207.496 kb on - strand, within PGA1_c02310 at 207.518 kb on + strand, within PGA1_c02310 at 207.518 kb on + strand, within PGA1_c02310 at 207.518 kb on + strand, within PGA1_c02310 at 207.526 kb on - strand, within PGA1_c02310 at 207.571 kb on + strand, within PGA1_c02310 at 207.584 kb on - strand, within PGA1_c02310 at 207.607 kb on + strand, within PGA1_c02310 at 207.607 kb on + strand, within PGA1_c02310 at 207.607 kb on + strand, within PGA1_c02310 at 207.615 kb on - strand, within PGA1_c02310 at 207.615 kb on - strand, within PGA1_c02310 at 207.615 kb on - strand, within PGA1_c02310 at 207.617 kb on + strand, within PGA1_c02310 at 207.622 kb on + strand, within PGA1_c02310 at 207.626 kb on + strand, within PGA1_c02310 at 207.642 kb on + strand, within PGA1_c02310 at 207.642 kb on + strand, within PGA1_c02310 at 207.669 kb on - strand, within PGA1_c02310 at 207.688 kb on - strand, within PGA1_c02310 at 207.753 kb on - strand, within PGA1_c02310 at 207.755 kb on + strand, within PGA1_c02310 at 207.755 kb on + strand, within PGA1_c02310 at 207.763 kb on - strand, within PGA1_c02310 at 207.787 kb on + strand, within PGA1_c02310 at 207.848 kb on + strand, within PGA1_c02310 at 207.859 kb on - strand, within PGA1_c02310 at 207.870 kb on - strand, within PGA1_c02310 at 207.880 kb on - strand, within PGA1_c02310 at 207.898 kb on + strand, within PGA1_c02310 at 207.898 kb on + strand, within PGA1_c02310 at 207.906 kb on - strand, within PGA1_c02310 at 207.906 kb on - strand, within PGA1_c02310 at 207.906 kb on - strand, within PGA1_c02310 at 207.910 kb on + strand, within PGA1_c02310 at 207.918 kb on - strand, within PGA1_c02310 at 207.920 kb on + strand, within PGA1_c02310 at 207.923 kb on - strand, within PGA1_c02310 at 207.930 kb on - strand, within PGA1_c02310 at 207.942 kb on + strand, within PGA1_c02310 at 207.944 kb on - strand, within PGA1_c02310 at 207.949 kb on - strand, within PGA1_c02310 at 207.977 kb on + strand, within PGA1_c02310 at 207.977 kb on + strand, within PGA1_c02310 at 207.978 kb on + strand, within PGA1_c02310 at 207.978 kb on + strand, within PGA1_c02310 at 207.978 kb on + strand, within PGA1_c02310 at 207.978 kb on + strand, within PGA1_c02310 at 207.985 kb on - strand, within PGA1_c02310 at 207.986 kb on - strand, within PGA1_c02310 at 207.986 kb on - strand, within PGA1_c02310 at 207.986 kb on - strand, within PGA1_c02310 at 207.986 kb on - strand, within PGA1_c02310 at 208.038 kb on - strand, within PGA1_c02310 at 208.067 kb on + strand, within PGA1_c02310 at 208.110 kb on + strand, within PGA1_c02310 at 208.126 kb on + strand, within PGA1_c02310 at 208.126 kb on + strand, within PGA1_c02310 at 208.126 kb on + strand, within PGA1_c02310 at 208.126 kb on + strand, within PGA1_c02310 at 208.126 kb on + strand, within PGA1_c02310 at 208.126 kb on + strand, within PGA1_c02310 at 208.146 kb on + strand, within PGA1_c02310 at 208.146 kb on + strand, within PGA1_c02310 at 208.154 kb on - strand, within PGA1_c02310 at 208.159 kb on + strand, within PGA1_c02310 at 208.159 kb on - strand, within PGA1_c02310 at 208.159 kb on - strand, within PGA1_c02310 at 208.167 kb on - strand, within PGA1_c02310 at 208.172 kb on - strand, within PGA1_c02310 at 208.172 kb on - strand, within PGA1_c02310 at 208.179 kb on - strand, within PGA1_c02310 at 208.198 kb on + strand, within PGA1_c02310 at 208.208 kb on + strand, within PGA1_c02310 at 208.208 kb on + strand, within PGA1_c02310 at 208.208 kb on + strand, within PGA1_c02310 at 208.208 kb on + strand, within PGA1_c02310 at 208.208 kb on + strand, within PGA1_c02310 at 208.216 kb on - strand, within PGA1_c02310 at 208.216 kb on - strand, within PGA1_c02310 at 208.216 kb on - strand, within PGA1_c02310 at 208.223 kb on + strand, within PGA1_c02310 at 208.231 kb on - strand, within PGA1_c02310 at 208.275 kb on + strand, within PGA1_c02310 at 208.291 kb on - strand, within PGA1_c02310 at 208.306 kb on + strand, within PGA1_c02310 at 208.306 kb on + strand, within PGA1_c02310 at 208.306 kb on + strand, within PGA1_c02310 at 208.311 kb on + strand, within PGA1_c02310 at 208.311 kb on + strand, within PGA1_c02310 at 208.317 kb on + strand, within PGA1_c02310 at 208.352 kb on - strand at 208.363 kb on - strand at 208.391 kb on + strand at 208.391 kb on + strand at 208.398 kb on + strand at 208.409 kb on + strand at 208.409 kb on + strand at 208.409 kb on + strand at 208.409 kb on + strand at 208.409 kb on + strand at 208.409 kb on + strand at 208.409 kb on + strand at 208.409 kb on + strand at 208.409 kb on + strand at 208.409 kb on + strand at 208.409 kb on + strand at 208.409 kb on + strand at 208.417 kb on - strand at 208.417 kb on - strand at 208.417 kb on - strand at 208.441 kb on - strand at 208.443 kb on + strand at 208.443 kb on - strand at 208.528 kb on - strand at 208.689 kb on + strand, within PGA1_c02320 at 208.689 kb on + strand, within PGA1_c02320 at 208.689 kb on + strand, within PGA1_c02320 at 208.689 kb on + strand, within PGA1_c02320 at 208.689 kb on + strand, within PGA1_c02320 at 208.733 kb on + strand, within PGA1_c02320 at 208.741 kb on - strand, within PGA1_c02320 at 208.748 kb on + strand, within PGA1_c02320 at 208.874 kb on - strand, within PGA1_c02320 at 208.876 kb on + strand, within PGA1_c02320 at 208.921 kb on + strand, within PGA1_c02320 at 208.951 kb on + strand, within PGA1_c02320 at 208.951 kb on + strand, within PGA1_c02320 at 208.969 kb on + strand, within PGA1_c02320 at 208.969 kb on + strand, within PGA1_c02320 at 208.969 kb on + strand, within PGA1_c02320 at 208.977 kb on - strand, within PGA1_c02320 at 208.977 kb on - strand, within PGA1_c02320 at 208.977 kb on - strand, within PGA1_c02320 at 208.977 kb on - strand, within PGA1_c02320 at 208.991 kb on - strand, within PGA1_c02320 at 209.001 kb on - strand, within PGA1_c02320 at 209.001 kb on - strand, within PGA1_c02320 at 209.005 kb on + strand, within PGA1_c02320 at 209.006 kb on + strand, within PGA1_c02320 at 209.013 kb on - strand, within PGA1_c02320 at 209.023 kb on - strand, within PGA1_c02320 at 209.044 kb on + strand, within PGA1_c02320 at 209.126 kb on - strand, within PGA1_c02320 at 209.128 kb on - strand, within PGA1_c02320 at 209.136 kb on - strand, within PGA1_c02320 at 209.141 kb on + strand, within PGA1_c02320 at 209.187 kb on - strand, within PGA1_c02320 at 209.204 kb on + strand, within PGA1_c02320 at 209.285 kb on + strand, within PGA1_c02320 at 209.383 kb on + strand, within PGA1_c02320 at 209.403 kb on + strand, within PGA1_c02320 at 209.406 kb on - strand, within PGA1_c02320
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 206,270 + PGA1_c02290 0.74 -0.6 206,270 + PGA1_c02290 0.74 -0.6 206,278 - PGA1_c02290 0.75 -0.6 206,278 - PGA1_c02290 0.75 +0.0 206,278 - PGA1_c02290 0.75 -0.9 206,278 - PGA1_c02290 0.75 -1.9 206,278 - PGA1_c02290 0.75 +0.4 206,278 - PGA1_c02290 0.75 +0.2 206,306 + PGA1_c02290 0.78 +0.1 206,319 + PGA1_c02290 0.80 -0.3 206,436 - -0.2 206,441 - -1.3 206,445 - +0.7 206,448 + +0.0 206,449 + +0.5 206,502 + -0.6 206,523 + +0.3 206,526 - -1.7 206,531 - -0.2 206,531 - -0.9 206,538 - +0.5 206,571 + PGA1_c02300 0.13 -1.0 206,575 - PGA1_c02300 0.14 -0.5 206,586 + PGA1_c02300 0.15 -2.3 206,586 + PGA1_c02300 0.15 -0.1 206,600 + PGA1_c02300 0.17 -0.3 206,603 + PGA1_c02300 0.17 +0.3 206,608 - PGA1_c02300 0.18 -0.7 206,608 - PGA1_c02300 0.18 -0.1 206,681 + PGA1_c02300 0.27 -0.1 206,710 - PGA1_c02300 0.31 -0.6 206,727 + PGA1_c02300 0.33 +0.1 206,729 + PGA1_c02300 0.33 -0.6 206,729 + PGA1_c02300 0.33 -1.6 206,771 + PGA1_c02300 0.39 -0.4 206,778 + PGA1_c02300 0.40 -1.6 206,802 - PGA1_c02300 0.43 -0.3 206,803 - PGA1_c02300 0.43 +0.1 206,803 - PGA1_c02300 0.43 -0.5 206,808 - PGA1_c02300 0.44 -0.3 206,810 + PGA1_c02300 0.44 -0.3 206,810 + PGA1_c02300 0.44 -0.2 206,818 - PGA1_c02300 0.45 -0.8 206,841 + PGA1_c02300 0.48 -0.6 206,844 + PGA1_c02300 0.48 -2.0 206,903 - PGA1_c02300 0.56 -2.1 206,913 - PGA1_c02300 0.57 +0.7 206,913 - PGA1_c02300 0.57 -0.3 206,928 + PGA1_c02300 0.59 -0.7 206,944 + PGA1_c02300 0.61 -0.1 206,947 - PGA1_c02300 0.61 +0.5 206,954 + PGA1_c02300 0.62 -0.9 206,987 - PGA1_c02300 0.67 -0.2 206,998 + PGA1_c02300 0.68 -1.0 206,998 + PGA1_c02300 0.68 -0.4 207,033 - PGA1_c02300 0.72 -1.2 207,065 + PGA1_c02300 0.77 -1.4 207,065 + PGA1_c02300 0.77 +0.1 207,073 - PGA1_c02300 0.78 -1.5 207,073 - PGA1_c02300 0.78 -1.0 207,073 - PGA1_c02300 0.78 -0.7 207,122 - PGA1_c02300 0.84 -0.6 207,179 + +0.1 207,187 - -0.9 207,187 - +0.1 207,200 + -0.5 207,208 - -0.9 207,231 - +0.3 207,243 - -0.3 207,274 + -1.2 207,274 + +0.1 207,282 - -0.3 207,282 - -2.0 207,304 + -1.0 207,355 - -1.1 207,398 - PGA1_c02310 0.13 -0.4 207,398 - PGA1_c02310 0.13 -0.7 207,408 - PGA1_c02310 0.14 -1.2 207,414 + PGA1_c02310 0.14 +0.2 207,425 + PGA1_c02310 0.15 -1.7 207,443 + PGA1_c02310 0.17 -1.3 207,494 + PGA1_c02310 0.21 -0.3 207,496 - PGA1_c02310 0.21 -0.2 207,518 + PGA1_c02310 0.23 +0.1 207,518 + PGA1_c02310 0.23 +1.0 207,518 + PGA1_c02310 0.23 -1.2 207,526 - PGA1_c02310 0.24 -0.3 207,571 + PGA1_c02310 0.27 +0.4 207,584 - PGA1_c02310 0.28 +0.1 207,607 + PGA1_c02310 0.30 -1.8 207,607 + PGA1_c02310 0.30 -0.2 207,607 + PGA1_c02310 0.30 +0.8 207,615 - PGA1_c02310 0.31 +0.4 207,615 - PGA1_c02310 0.31 -1.0 207,615 - PGA1_c02310 0.31 -2.3 207,617 + PGA1_c02310 0.31 -0.7 207,622 + PGA1_c02310 0.32 -0.5 207,626 + PGA1_c02310 0.32 -0.4 207,642 + PGA1_c02310 0.33 -0.6 207,642 + PGA1_c02310 0.33 +0.3 207,669 - PGA1_c02310 0.36 -1.5 207,688 - PGA1_c02310 0.37 +0.2 207,753 - PGA1_c02310 0.43 -0.3 207,755 + PGA1_c02310 0.43 -0.5 207,755 + PGA1_c02310 0.43 -1.7 207,763 - PGA1_c02310 0.43 -1.1 207,787 + PGA1_c02310 0.45 -0.7 207,848 + PGA1_c02310 0.51 -0.5 207,859 - PGA1_c02310 0.51 +0.5 207,870 - PGA1_c02310 0.52 +0.1 207,880 - PGA1_c02310 0.53 -3.0 207,898 + PGA1_c02310 0.55 -0.4 207,898 + PGA1_c02310 0.55 +0.1 207,906 - PGA1_c02310 0.55 -0.5 207,906 - PGA1_c02310 0.55 -2.0 207,906 - PGA1_c02310 0.55 -1.4 207,910 + PGA1_c02310 0.56 -1.6 207,918 - PGA1_c02310 0.56 -1.5 207,920 + PGA1_c02310 0.57 -0.1 207,923 - PGA1_c02310 0.57 -2.0 207,930 - PGA1_c02310 0.57 -0.7 207,942 + PGA1_c02310 0.58 -0.3 207,944 - PGA1_c02310 0.59 -2.3 207,949 - PGA1_c02310 0.59 -0.4 207,977 + PGA1_c02310 0.61 -1.6 207,977 + PGA1_c02310 0.61 -0.5 207,978 + PGA1_c02310 0.61 -1.0 207,978 + PGA1_c02310 0.61 -1.6 207,978 + PGA1_c02310 0.61 -2.1 207,978 + PGA1_c02310 0.61 -0.2 207,985 - PGA1_c02310 0.62 -0.5 207,986 - PGA1_c02310 0.62 -0.3 207,986 - PGA1_c02310 0.62 -0.6 207,986 - PGA1_c02310 0.62 -0.5 207,986 - PGA1_c02310 0.62 -1.0 208,038 - PGA1_c02310 0.66 -1.5 208,067 + PGA1_c02310 0.69 -1.3 208,110 + PGA1_c02310 0.72 -1.0 208,126 + PGA1_c02310 0.74 -1.8 208,126 + PGA1_c02310 0.74 -0.6 208,126 + PGA1_c02310 0.74 +0.0 208,126 + PGA1_c02310 0.74 +0.3 208,126 + PGA1_c02310 0.74 -0.7 208,126 + PGA1_c02310 0.74 +0.2 208,146 + PGA1_c02310 0.75 +0.8 208,146 + PGA1_c02310 0.75 -1.5 208,154 - PGA1_c02310 0.76 -1.2 208,159 + PGA1_c02310 0.77 -1.7 208,159 - PGA1_c02310 0.77 -0.5 208,159 - PGA1_c02310 0.77 -0.4 208,167 - PGA1_c02310 0.77 -1.8 208,172 - PGA1_c02310 0.78 -0.3 208,172 - PGA1_c02310 0.78 -0.3 208,179 - PGA1_c02310 0.78 -1.2 208,198 + PGA1_c02310 0.80 -0.4 208,208 + PGA1_c02310 0.81 -1.0 208,208 + PGA1_c02310 0.81 -0.5 208,208 + PGA1_c02310 0.81 -1.1 208,208 + PGA1_c02310 0.81 -0.7 208,208 + PGA1_c02310 0.81 -0.0 208,216 - PGA1_c02310 0.81 -0.7 208,216 - PGA1_c02310 0.81 -0.4 208,216 - PGA1_c02310 0.81 +0.1 208,223 + PGA1_c02310 0.82 -1.3 208,231 - PGA1_c02310 0.83 -2.7 208,275 + PGA1_c02310 0.86 -2.3 208,291 - PGA1_c02310 0.88 -0.5 208,306 + PGA1_c02310 0.89 -1.0 208,306 + PGA1_c02310 0.89 -2.3 208,306 + PGA1_c02310 0.89 -1.7 208,311 + PGA1_c02310 0.89 -1.7 208,311 + PGA1_c02310 0.89 +0.0 208,317 + PGA1_c02310 0.90 -0.4 208,352 - -0.1 208,363 - +0.2 208,391 + +0.7 208,391 + -1.2 208,398 + -1.3 208,409 + -0.8 208,409 + +0.3 208,409 + -0.6 208,409 + -0.1 208,409 + +0.3 208,409 + -0.2 208,409 + +1.0 208,409 + +0.8 208,409 + -0.0 208,409 + +0.4 208,409 + -0.4 208,409 + -0.1 208,417 - -1.1 208,417 - -0.1 208,417 - -0.5 208,441 - +0.8 208,443 + +0.5 208,443 - +0.3 208,528 - -0.5 208,689 + PGA1_c02320 0.19 -0.8 208,689 + PGA1_c02320 0.19 -0.0 208,689 + PGA1_c02320 0.19 +0.3 208,689 + PGA1_c02320 0.19 +0.6 208,689 + PGA1_c02320 0.19 -1.0 208,733 + PGA1_c02320 0.23 -0.5 208,741 - PGA1_c02320 0.23 -0.2 208,748 + PGA1_c02320 0.24 -0.5 208,874 - PGA1_c02320 0.35 -0.2 208,876 + PGA1_c02320 0.35 +0.4 208,921 + PGA1_c02320 0.39 -0.6 208,951 + PGA1_c02320 0.42 -0.3 208,951 + PGA1_c02320 0.42 +0.2 208,969 + PGA1_c02320 0.44 -0.0 208,969 + PGA1_c02320 0.44 +0.1 208,969 + PGA1_c02320 0.44 +1.1 208,977 - PGA1_c02320 0.44 +0.6 208,977 - PGA1_c02320 0.44 -0.3 208,977 - PGA1_c02320 0.44 +0.6 208,977 - PGA1_c02320 0.44 -0.6 208,991 - PGA1_c02320 0.46 -0.3 209,001 - PGA1_c02320 0.46 +0.0 209,001 - PGA1_c02320 0.46 +0.0 209,005 + PGA1_c02320 0.47 +1.9 209,006 + PGA1_c02320 0.47 -0.0 209,013 - PGA1_c02320 0.47 +1.2 209,023 - PGA1_c02320 0.48 -0.2 209,044 + PGA1_c02320 0.50 +0.1 209,126 - PGA1_c02320 0.57 -0.3 209,128 - PGA1_c02320 0.58 -0.3 209,136 - PGA1_c02320 0.58 +0.5 209,141 + PGA1_c02320 0.59 +0.0 209,187 - PGA1_c02320 0.63 +0.1 209,204 + PGA1_c02320 0.64 +0.6 209,285 + PGA1_c02320 0.71 +0.3 209,383 + PGA1_c02320 0.80 -0.1 209,403 + PGA1_c02320 0.82 -0.1 209,406 - PGA1_c02320 0.82 -0.6
Or see this region's nucleotide sequence