Experiment: m.b. Aluminum chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2021 and HP15_2022 are separated by 277 nucleotides HP15_2022 and HP15_2023 are separated by 60 nucleotides HP15_2023 and HP15_2024 are separated by 28 nucleotides HP15_2024 and HP15_2025 are separated by 32 nucleotides
HP15_2021: HP15_2021 - membrane protein containing DUF606, at 2,122,791 to 2,123,255
_2021
HP15_2022: HP15_2022 - lipocalin family protein, at 2,123,533 to 2,124,072
_2022
HP15_2023: HP15_2023 - UDP-glucuronic acid epimerase, at 2,124,133 to 2,125,140
_2023
HP15_2024: HP15_2024 - conserved hypothetical protein, secreted, at 2,125,169 to 2,125,906
_2024
HP15_2025: HP15_2025 - phosphoribosylaminoimidazole-succinocarboxamide synthase, at 2,125,939 to 2,126,652
_2025
Position (kb)
2124
2125
2126 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2123.191 kb on + strand, within HP15_2021 at 2123.243 kb on - strand at 2123.251 kb on + strand at 2123.369 kb on + strand at 2123.431 kb on + strand at 2123.621 kb on - strand, within HP15_2022 at 2123.634 kb on + strand, within HP15_2022 at 2123.642 kb on - strand, within HP15_2022 at 2123.647 kb on - strand, within HP15_2022 at 2123.671 kb on + strand, within HP15_2022 at 2123.679 kb on - strand, within HP15_2022 at 2123.679 kb on - strand, within HP15_2022 at 2123.776 kb on + strand, within HP15_2022 at 2123.837 kb on + strand, within HP15_2022 at 2123.881 kb on + strand, within HP15_2022 at 2123.889 kb on - strand, within HP15_2022 at 2123.988 kb on + strand, within HP15_2022 at 2125.463 kb on - strand, within HP15_2024 at 2125.512 kb on - strand, within HP15_2024 at 2125.667 kb on - strand, within HP15_2024 at 2125.704 kb on + strand, within HP15_2024 at 2125.843 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM remove 2,123,191 + HP15_2021 0.86 +0.2 2,123,243 - -1.1 2,123,251 + +1.2 2,123,369 + +0.0 2,123,431 + -0.5 2,123,621 - HP15_2022 0.16 -0.1 2,123,634 + HP15_2022 0.19 +0.5 2,123,642 - HP15_2022 0.20 -1.2 2,123,647 - HP15_2022 0.21 -0.3 2,123,671 + HP15_2022 0.26 -0.2 2,123,679 - HP15_2022 0.27 -0.6 2,123,679 - HP15_2022 0.27 +0.9 2,123,776 + HP15_2022 0.45 +0.9 2,123,837 + HP15_2022 0.56 +0.0 2,123,881 + HP15_2022 0.64 -0.2 2,123,889 - HP15_2022 0.66 -0.1 2,123,988 + HP15_2022 0.84 +0.1 2,125,463 - HP15_2024 0.40 +0.3 2,125,512 - HP15_2024 0.46 -1.2 2,125,667 - HP15_2024 0.67 +0.1 2,125,704 + HP15_2024 0.72 -3.3 2,125,843 - -0.1
Or see this region's nucleotide sequence