Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02100

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02090 and PGA1_c02100 are separated by 439 nucleotidesPGA1_c02100 and PGA1_c02110 are separated by 66 nucleotides PGA1_c02090: PGA1_c02090 - inner membrane protein OxaA, at 190,651 to 192,468 _c02090 PGA1_c02100: PGA1_c02100 - diguanylate cyclase (GGDEF) domain-containing protein, at 192,908 to 194,452 _c02100 PGA1_c02110: PGA1_c02110 - tRNA 2-thiocytidine biosynthesis protein TtcA, at 194,519 to 195,406 _c02110 Position (kb) 192 193 194 195Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 192.549 kb on + strandat 192.580 kb on + strandat 192.667 kb on + strandat 192.715 kb on + strandat 192.723 kb on - strandat 192.743 kb on - strandat 192.743 kb on - strandat 192.743 kb on - strandat 192.743 kb on - strandat 192.743 kb on - strandat 192.743 kb on - strandat 192.743 kb on - strandat 192.743 kb on - strandat 192.743 kb on - strandat 192.785 kb on + strandat 192.785 kb on + strandat 192.799 kb on + strandat 192.804 kb on + strandat 192.807 kb on - strandat 192.812 kb on - strandat 192.834 kb on - strandat 192.863 kb on + strandat 192.868 kb on + strandat 192.897 kb on - strandat 192.982 kb on + strandat 193.014 kb on - strandat 193.018 kb on + strandat 193.093 kb on + strand, within PGA1_c02100at 193.093 kb on + strand, within PGA1_c02100at 193.096 kb on - strand, within PGA1_c02100at 193.149 kb on - strand, within PGA1_c02100at 193.149 kb on - strand, within PGA1_c02100at 193.190 kb on - strand, within PGA1_c02100at 193.205 kb on + strand, within PGA1_c02100at 193.205 kb on - strand, within PGA1_c02100at 193.213 kb on - strand, within PGA1_c02100at 193.225 kb on + strand, within PGA1_c02100at 193.226 kb on + strand, within PGA1_c02100at 193.329 kb on + strand, within PGA1_c02100at 193.339 kb on + strand, within PGA1_c02100at 193.347 kb on - strand, within PGA1_c02100at 193.373 kb on - strand, within PGA1_c02100at 193.381 kb on + strand, within PGA1_c02100at 193.386 kb on + strand, within PGA1_c02100at 193.410 kb on + strand, within PGA1_c02100at 193.420 kb on + strand, within PGA1_c02100at 193.428 kb on - strand, within PGA1_c02100at 193.449 kb on - strand, within PGA1_c02100at 193.456 kb on + strand, within PGA1_c02100at 193.473 kb on + strand, within PGA1_c02100at 193.497 kb on + strand, within PGA1_c02100at 193.524 kb on + strand, within PGA1_c02100at 193.591 kb on + strand, within PGA1_c02100at 193.599 kb on - strand, within PGA1_c02100at 193.649 kb on - strand, within PGA1_c02100at 193.795 kb on + strand, within PGA1_c02100at 193.800 kb on + strand, within PGA1_c02100at 193.834 kb on + strand, within PGA1_c02100at 193.834 kb on + strand, within PGA1_c02100at 193.903 kb on - strand, within PGA1_c02100at 193.930 kb on - strand, within PGA1_c02100at 193.985 kb on - strand, within PGA1_c02100at 194.019 kb on + strand, within PGA1_c02100at 194.027 kb on - strand, within PGA1_c02100at 194.072 kb on - strand, within PGA1_c02100at 194.151 kb on - strand, within PGA1_c02100at 194.174 kb on + strand, within PGA1_c02100at 194.174 kb on + strand, within PGA1_c02100at 194.174 kb on + strand, within PGA1_c02100at 194.174 kb on + strand, within PGA1_c02100at 194.182 kb on - strand, within PGA1_c02100at 194.182 kb on - strand, within PGA1_c02100at 194.182 kb on - strand, within PGA1_c02100at 194.182 kb on - strand, within PGA1_c02100at 194.182 kb on - strand, within PGA1_c02100at 194.204 kb on - strand, within PGA1_c02100at 194.240 kb on + strand, within PGA1_c02100at 194.248 kb on - strand, within PGA1_c02100at 194.248 kb on - strand, within PGA1_c02100at 194.430 kb on - strandat 194.453 kb on + strandat 194.453 kb on + strandat 194.461 kb on - strandat 194.468 kb on - strandat 194.494 kb on - strandat 194.500 kb on - strandat 194.596 kb on + strandat 194.604 kb on - strandat 194.625 kb on + strand, within PGA1_c02110at 194.633 kb on - strand, within PGA1_c02110at 194.659 kb on + strand, within PGA1_c02110at 194.669 kb on + strand, within PGA1_c02110at 194.719 kb on + strand, within PGA1_c02110at 194.946 kb on - strand, within PGA1_c02110at 194.946 kb on - strand, within PGA1_c02110at 194.946 kb on - strand, within PGA1_c02110at 194.946 kb on - strand, within PGA1_c02110at 194.975 kb on - strand, within PGA1_c02110at 194.991 kb on + strand, within PGA1_c02110at 194.992 kb on - strand, within PGA1_c02110at 195.025 kb on - strand, within PGA1_c02110at 195.128 kb on - strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.210 kb on + strand, within PGA1_c02110at 195.210 kb on + strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.218 kb on + strand, within PGA1_c02110at 195.255 kb on - strand, within PGA1_c02110at 195.272 kb on + strand, within PGA1_c02110at 195.415 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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192,549 + +0.0
192,580 + +0.2
192,667 + +0.6
192,715 + -0.0
192,723 - -0.2
192,743 - +0.1
192,743 - -0.1
192,743 - +0.0
192,743 - +0.7
192,743 - -0.0
192,743 - -0.3
192,743 - -0.2
192,743 - -0.0
192,743 - -0.1
192,785 + +0.2
192,785 + +0.4
192,799 + -1.0
192,804 + -0.4
192,807 - -0.2
192,812 - -0.7
192,834 - +0.3
192,863 + -1.2
192,868 + +0.0
192,897 - -0.2
192,982 + -1.5
193,014 - -2.2
193,018 + -0.9
193,093 + PGA1_c02100 0.12 +0.3
193,093 + PGA1_c02100 0.12 -1.1
193,096 - PGA1_c02100 0.12 -0.1
193,149 - PGA1_c02100 0.16 -0.6
193,149 - PGA1_c02100 0.16 +0.0
193,190 - PGA1_c02100 0.18 -2.0
193,205 + PGA1_c02100 0.19 -2.0
193,205 - PGA1_c02100 0.19 -0.4
193,213 - PGA1_c02100 0.20 -0.4
193,225 + PGA1_c02100 0.21 -0.6
193,226 + PGA1_c02100 0.21 -1.5
193,329 + PGA1_c02100 0.27 -0.7
193,339 + PGA1_c02100 0.28 -1.9
193,347 - PGA1_c02100 0.28 -0.7
193,373 - PGA1_c02100 0.30 -1.4
193,381 + PGA1_c02100 0.31 -0.2
193,386 + PGA1_c02100 0.31 -2.1
193,410 + PGA1_c02100 0.32 -1.8
193,420 + PGA1_c02100 0.33 -3.1
193,428 - PGA1_c02100 0.34 -1.8
193,449 - PGA1_c02100 0.35 -0.8
193,456 + PGA1_c02100 0.35 -1.7
193,473 + PGA1_c02100 0.37 -2.1
193,497 + PGA1_c02100 0.38 -3.0
193,524 + PGA1_c02100 0.40 -1.8
193,591 + PGA1_c02100 0.44 -1.2
193,599 - PGA1_c02100 0.45 -0.6
193,649 - PGA1_c02100 0.48 -0.5
193,795 + PGA1_c02100 0.57 -1.2
193,800 + PGA1_c02100 0.58 -1.4
193,834 + PGA1_c02100 0.60 -4.1
193,834 + PGA1_c02100 0.60 -1.5
193,903 - PGA1_c02100 0.64 -0.7
193,930 - PGA1_c02100 0.66 -1.0
193,985 - PGA1_c02100 0.70 -1.8
194,019 + PGA1_c02100 0.72 +0.4
194,027 - PGA1_c02100 0.72 -1.4
194,072 - PGA1_c02100 0.75 +0.0
194,151 - PGA1_c02100 0.80 -1.0
194,174 + PGA1_c02100 0.82 -1.8
194,174 + PGA1_c02100 0.82 +1.0
194,174 + PGA1_c02100 0.82 -0.9
194,174 + PGA1_c02100 0.82 -2.4
194,182 - PGA1_c02100 0.82 -1.4
194,182 - PGA1_c02100 0.82 -1.6
194,182 - PGA1_c02100 0.82 -0.3
194,182 - PGA1_c02100 0.82 -1.4
194,182 - PGA1_c02100 0.82 -0.5
194,204 - PGA1_c02100 0.84 -0.0
194,240 + PGA1_c02100 0.86 -1.4
194,248 - PGA1_c02100 0.87 -0.3
194,248 - PGA1_c02100 0.87 -1.4
194,430 - -1.4
194,453 + +0.2
194,453 + -1.6
194,461 - -1.5
194,468 - -0.4
194,494 - -0.5
194,500 - -2.0
194,596 + -0.0
194,604 - -0.5
194,625 + PGA1_c02110 0.12 -0.0
194,633 - PGA1_c02110 0.13 +0.0
194,659 + PGA1_c02110 0.16 -0.1
194,669 + PGA1_c02110 0.17 -0.2
194,719 + PGA1_c02110 0.23 +0.1
194,946 - PGA1_c02110 0.48 +1.3
194,946 - PGA1_c02110 0.48 -0.2
194,946 - PGA1_c02110 0.48 -0.1
194,946 - PGA1_c02110 0.48 -1.4
194,975 - PGA1_c02110 0.51 -0.4
194,991 + PGA1_c02110 0.53 +0.4
194,992 - PGA1_c02110 0.53 -0.4
195,025 - PGA1_c02110 0.57 +0.4
195,128 - PGA1_c02110 0.69 -0.1
195,208 + PGA1_c02110 0.78 -0.2
195,208 + PGA1_c02110 0.78 +1.4
195,208 + PGA1_c02110 0.78 +0.5
195,208 + PGA1_c02110 0.78 +0.2
195,208 + PGA1_c02110 0.78 -1.1
195,208 + PGA1_c02110 0.78 -1.8
195,208 + PGA1_c02110 0.78 +0.5
195,208 + PGA1_c02110 0.78 -2.3
195,208 + PGA1_c02110 0.78 +0.1
195,208 + PGA1_c02110 0.78 -0.5
195,208 + PGA1_c02110 0.78 +0.1
195,208 + PGA1_c02110 0.78 +0.4
195,208 + PGA1_c02110 0.78 -0.0
195,208 + PGA1_c02110 0.78 -0.3
195,208 + PGA1_c02110 0.78 -0.3
195,208 + PGA1_c02110 0.78 -0.1
195,208 + PGA1_c02110 0.78 +0.5
195,208 + PGA1_c02110 0.78 +0.5
195,208 + PGA1_c02110 0.78 -0.6
195,208 + PGA1_c02110 0.78 -0.1
195,208 + PGA1_c02110 0.78 +0.4
195,210 + PGA1_c02110 0.78 -0.1
195,210 + PGA1_c02110 0.78 -1.0
195,216 - PGA1_c02110 0.78 +0.8
195,216 - PGA1_c02110 0.78 +0.6
195,216 - PGA1_c02110 0.78 -0.4
195,216 - PGA1_c02110 0.78 +1.4
195,216 - PGA1_c02110 0.78 +0.1
195,216 - PGA1_c02110 0.78 +0.1
195,216 - PGA1_c02110 0.78 -0.8
195,216 - PGA1_c02110 0.78 +0.2
195,216 - PGA1_c02110 0.78 -0.1
195,216 - PGA1_c02110 0.78 +0.1
195,216 - PGA1_c02110 0.78 -2.4
195,216 - PGA1_c02110 0.78 -0.4
195,216 - PGA1_c02110 0.78 +0.9
195,216 - PGA1_c02110 0.78 -0.1
195,216 - PGA1_c02110 0.78 +0.4
195,216 - PGA1_c02110 0.78 +0.5
195,216 - PGA1_c02110 0.78 +0.0
195,216 - PGA1_c02110 0.78 +0.5
195,216 - PGA1_c02110 0.78 +0.3
195,216 - PGA1_c02110 0.78 -0.0
195,216 - PGA1_c02110 0.78 +1.1
195,216 - PGA1_c02110 0.78 -0.4
195,216 - PGA1_c02110 0.78 +0.6
195,216 - PGA1_c02110 0.78 -0.3
195,216 - PGA1_c02110 0.78 -0.2
195,216 - PGA1_c02110 0.78 +1.4
195,216 - PGA1_c02110 0.78 +0.5
195,216 - PGA1_c02110 0.78 +0.1
195,216 - PGA1_c02110 0.78 -0.1
195,216 - PGA1_c02110 0.78 +0.6
195,218 + PGA1_c02110 0.79 -0.1
195,255 - PGA1_c02110 0.83 +0.1
195,272 + PGA1_c02110 0.85 +0.6
195,415 - +0.9

Or see this region's nucleotide sequence