Experiment: m.b. Aluminum chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1998 and HP15_1999 overlap by 4 nucleotides HP15_1999 and HP15_2000 are separated by 159 nucleotides HP15_2000 and HP15_2001 are separated by 70 nucleotides HP15_2001 and HP15_2002 are separated by 12 nucleotides HP15_2002 and HP15_2003 overlap by 4 nucleotides
HP15_1998: HP15_1998 - conserved hypothetical protein, at 2,104,019 to 2,104,771
_1998
HP15_1999: HP15_1999 - hypothetical protein, at 2,104,768 to 2,105,268
_1999
HP15_2000: HP15_2000 - conserved hypothetical protein, at 2,105,428 to 2,105,706
_2000
HP15_2001: HP15_2001 - hypothetical protein, at 2,105,777 to 2,106,061
_2001
HP15_2002: HP15_2002 - conserved hypothetical protein, at 2,106,074 to 2,106,415
_2002
HP15_2003: HP15_2003 - hypothetical protein, at 2,106,412 to 2,106,843
_2003
Position (kb)
2105
2106 Strain fitness (log2 ratio)
-1
0
1 at 2104.578 kb on - strand, within HP15_1998 at 2104.609 kb on + strand, within HP15_1998 at 2104.619 kb on - strand, within HP15_1998 at 2104.651 kb on - strand, within HP15_1998 at 2104.854 kb on - strand, within HP15_1999 at 2104.924 kb on - strand, within HP15_1999 at 2104.975 kb on - strand, within HP15_1999 at 2105.051 kb on - strand, within HP15_1999 at 2105.051 kb on - strand, within HP15_1999 at 2105.051 kb on - strand, within HP15_1999 at 2105.051 kb on - strand, within HP15_1999 at 2105.115 kb on - strand, within HP15_1999 at 2105.134 kb on - strand, within HP15_1999 at 2105.277 kb on - strand at 2105.542 kb on - strand, within HP15_2000 at 2105.542 kb on - strand, within HP15_2000 at 2105.634 kb on - strand, within HP15_2000 at 2105.940 kb on - strand, within HP15_2001 at 2105.953 kb on - strand, within HP15_2001 at 2106.089 kb on - strand at 2106.277 kb on + strand, within HP15_2002 at 2106.295 kb on + strand, within HP15_2002 at 2106.365 kb on + strand, within HP15_2002 at 2106.416 kb on - strand at 2106.650 kb on - strand, within HP15_2003
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM remove 2,104,578 - HP15_1998 0.74 +0.6 2,104,609 + HP15_1998 0.78 +0.3 2,104,619 - HP15_1998 0.80 +0.3 2,104,651 - HP15_1998 0.84 +0.1 2,104,854 - HP15_1999 0.17 +0.3 2,104,924 - HP15_1999 0.31 -0.5 2,104,975 - HP15_1999 0.41 -0.2 2,105,051 - HP15_1999 0.56 -0.3 2,105,051 - HP15_1999 0.56 +0.2 2,105,051 - HP15_1999 0.56 +0.2 2,105,051 - HP15_1999 0.56 +0.4 2,105,115 - HP15_1999 0.69 -0.2 2,105,134 - HP15_1999 0.73 +0.8 2,105,277 - +0.1 2,105,542 - HP15_2000 0.41 +1.6 2,105,542 - HP15_2000 0.41 +0.7 2,105,634 - HP15_2000 0.74 -0.9 2,105,940 - HP15_2001 0.57 -0.4 2,105,953 - HP15_2001 0.62 -0.4 2,106,089 - +0.1 2,106,277 + HP15_2002 0.59 -0.8 2,106,295 + HP15_2002 0.65 +1.2 2,106,365 + HP15_2002 0.85 -1.1 2,106,416 - -0.2 2,106,650 - HP15_2003 0.55 +0.0
Or see this region's nucleotide sequence