Experiment: m.b. Aluminum chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1859 and HP15_1860 are separated by 29 nucleotides HP15_1860 and HP15_1861 are separated by 143 nucleotides HP15_1861 and HP15_1862 are separated by 12 nucleotides
HP15_1859: HP15_1859 - patatin-like phospholipase domain-containing protein, at 1,961,853 to 1,963,340
_1859
HP15_1860: HP15_1860 - VacJ family lipoprotein, at 1,963,370 to 1,964,161
_1860
HP15_1861: HP15_1861 - thioesterase superfamily protein, at 1,964,305 to 1,964,655
_1861
HP15_1862: HP15_1862 - 3-oxoacyl-(acyl carrier protein) synthase III, at 1,964,668 to 1,965,789
_1862
Position (kb) 1964
1965 Strain fitness (log2 ratio) -1
0
1
2 at 1963.348 kb on - strand at 1963.637 kb on + strand, within HP15_1860 at 1963.637 kb on + strand, within HP15_1860 at 1963.749 kb on - strand, within HP15_1860 at 1963.777 kb on + strand, within HP15_1860 at 1963.777 kb on + strand, within HP15_1860 at 1963.784 kb on + strand, within HP15_1860 at 1963.867 kb on + strand, within HP15_1860 at 1964.035 kb on - strand, within HP15_1860 at 1964.249 kb on + strand at 1964.274 kb on + strand at 1964.284 kb on - strand at 1964.343 kb on - strand, within HP15_1861 at 1964.381 kb on + strand, within HP15_1861 at 1964.425 kb on + strand, within HP15_1861 at 1964.503 kb on + strand, within HP15_1861 at 1964.808 kb on + strand, within HP15_1862 at 1964.855 kb on + strand, within HP15_1862 at 1964.856 kb on - strand, within HP15_1862 at 1964.882 kb on - strand, within HP15_1862 at 1965.128 kb on + strand, within HP15_1862 at 1965.311 kb on - strand, within HP15_1862 at 1965.311 kb on - strand, within HP15_1862 at 1965.416 kb on - strand, within HP15_1862 at 1965.506 kb on + strand, within HP15_1862
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM remove 1,963,348 - +0.2 1,963,637 + HP15_1860 0.34 +1.2 1,963,637 + HP15_1860 0.34 +2.0 1,963,749 - HP15_1860 0.48 +1.6 1,963,777 + HP15_1860 0.51 +1.9 1,963,777 + HP15_1860 0.51 +1.6 1,963,784 + HP15_1860 0.52 +1.4 1,963,867 + HP15_1860 0.63 +0.6 1,964,035 - HP15_1860 0.84 +1.0 1,964,249 + +2.0 1,964,274 + +1.6 1,964,284 - -0.4 1,964,343 - HP15_1861 0.11 +0.3 1,964,381 + HP15_1861 0.22 +2.0 1,964,425 + HP15_1861 0.34 +0.5 1,964,503 + HP15_1861 0.56 +0.1 1,964,808 + HP15_1862 0.12 +0.5 1,964,855 + HP15_1862 0.17 +0.9 1,964,856 - HP15_1862 0.17 +0.2 1,964,882 - HP15_1862 0.19 +1.2 1,965,128 + HP15_1862 0.41 +2.0 1,965,311 - HP15_1862 0.57 -0.1 1,965,311 - HP15_1862 0.57 +0.3 1,965,416 - HP15_1862 0.67 +0.4 1,965,506 + HP15_1862 0.75 +0.3
Or see this region's nucleotide sequence