Experiment: m.b. Aluminum chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1603 and HP15_1604 are separated by 67 nucleotides HP15_1604 and HP15_1605 are separated by 6 nucleotides HP15_1605 and HP15_1606 overlap by 4 nucleotides HP15_1606 and HP15_1607 are separated by 59 nucleotides
HP15_1603: HP15_1603 - general secretion pathway protein F, at 1,700,388 to 1,701,599
_1603
HP15_1604: HP15_1604 - general secretion pathway protein G, at 1,701,667 to 1,702,119
_1604
HP15_1605: HP15_1605 - general secretion pathway protein H, at 1,702,126 to 1,702,656
_1605
HP15_1606: HP15_1606 - general secretion pathway protein I-like protein, at 1,702,653 to 1,703,027
_1606
HP15_1607: HP15_1607 - general secretion pathway protein J-like protein, at 1,703,087 to 1,703,803
_1607
Position (kb)
1702
1703 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1701.129 kb on - strand, within HP15_1603 at 1701.193 kb on - strand, within HP15_1603 at 1701.418 kb on - strand, within HP15_1603 at 1701.458 kb on + strand, within HP15_1603 at 1701.529 kb on + strand at 1701.707 kb on + strand at 1701.715 kb on - strand, within HP15_1604 at 1701.715 kb on - strand, within HP15_1604 at 1701.715 kb on - strand, within HP15_1604 at 1701.715 kb on - strand, within HP15_1604 at 1701.783 kb on + strand, within HP15_1604 at 1701.971 kb on - strand, within HP15_1604 at 1702.122 kb on - strand at 1702.122 kb on - strand at 1702.144 kb on - strand at 1702.169 kb on - strand at 1702.280 kb on - strand, within HP15_1605 at 1702.289 kb on - strand, within HP15_1605 at 1702.500 kb on + strand, within HP15_1605 at 1702.612 kb on - strand at 1702.883 kb on + strand, within HP15_1606 at 1703.335 kb on - strand, within HP15_1607 at 1703.374 kb on - strand, within HP15_1607 at 1703.394 kb on - strand, within HP15_1607 at 1703.649 kb on + strand, within HP15_1607
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM remove 1,701,129 - HP15_1603 0.61 +0.9 1,701,193 - HP15_1603 0.66 +1.0 1,701,418 - HP15_1603 0.85 +0.8 1,701,458 + HP15_1603 0.88 +0.3 1,701,529 + +0.8 1,701,707 + -0.5 1,701,715 - HP15_1604 0.11 +0.4 1,701,715 - HP15_1604 0.11 -0.6 1,701,715 - HP15_1604 0.11 -1.9 1,701,715 - HP15_1604 0.11 +0.6 1,701,783 + HP15_1604 0.26 +0.8 1,701,971 - HP15_1604 0.67 +0.8 1,702,122 - +1.9 1,702,122 - +1.5 1,702,144 - +0.6 1,702,169 - +0.9 1,702,280 - HP15_1605 0.29 +1.1 1,702,289 - HP15_1605 0.31 +0.5 1,702,500 + HP15_1605 0.70 +0.8 1,702,612 - +0.2 1,702,883 + HP15_1606 0.61 +0.6 1,703,335 - HP15_1607 0.35 +1.3 1,703,374 - HP15_1607 0.40 +0.3 1,703,394 - HP15_1607 0.43 +0.6 1,703,649 + HP15_1607 0.78 -0.4
Or see this region's nucleotide sequence