Strain Fitness in Marinobacter adhaerens HP15 around HP15_1173

Experiment: m.b. Aluminum chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1172 and HP15_1173 are separated by 49 nucleotidesHP15_1173 and HP15_1174 are separated by 89 nucleotides HP15_1172: HP15_1172 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 1,203,913 to 1,205,097 _1172 HP15_1173: HP15_1173 - membrane-associated zinc metalloprotease, at 1,205,147 to 1,206,496 _1173 HP15_1174: HP15_1174 - outer membrane protein, bacterial surface antigen family, at 1,206,586 to 1,208,859 _1174 Position (kb) 1205 1206 1207Strain fitness (log2 ratio) -1 0 1at 1205.106 kb on + strandat 1205.229 kb on - strandat 1205.244 kb on + strandat 1205.305 kb on + strand, within HP15_1173at 1205.511 kb on + strand, within HP15_1173at 1205.519 kb on - strand, within HP15_1173at 1205.573 kb on + strand, within HP15_1173at 1205.680 kb on - strand, within HP15_1173at 1205.757 kb on + strand, within HP15_1173at 1205.816 kb on - strand, within HP15_1173at 1206.122 kb on + strand, within HP15_1173

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM
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1,205,106 + -0.2
1,205,229 - +0.8
1,205,244 + -0.3
1,205,305 + HP15_1173 0.12 +0.6
1,205,511 + HP15_1173 0.27 +0.2
1,205,519 - HP15_1173 0.28 +1.1
1,205,573 + HP15_1173 0.32 +0.6
1,205,680 - HP15_1173 0.39 +0.4
1,205,757 + HP15_1173 0.45 -0.1
1,205,816 - HP15_1173 0.50 +1.2
1,206,122 + HP15_1173 0.72 -0.1

Or see this region's nucleotide sequence