Strain Fitness in Marinobacter adhaerens HP15 around HP15_1133

Experiment: m.b. Aluminum chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1132 and HP15_1133 overlap by 4 nucleotidesHP15_1133 and HP15_1134 are separated by 245 nucleotidesHP15_1134 and HP15_1135 are separated by 286 nucleotides HP15_1132: HP15_1132 - gonadoliberin III-related protein, at 1,160,910 to 1,162,427 _1132 HP15_1133: HP15_1133 - protein containing DUF785, at 1,162,424 to 1,163,122 _1133 HP15_1134: HP15_1134 - conserved hypothetical protein, at 1,163,368 to 1,163,757 _1134 HP15_1135: HP15_1135 - DNA recombination protein RmuC, at 1,164,044 to 1,165,519 _1135 Position (kb) 1162 1163 1164Strain fitness (log2 ratio) -2 -1 0 1at 1161.524 kb on + strand, within HP15_1132at 1161.524 kb on + strand, within HP15_1132at 1161.571 kb on + strand, within HP15_1132at 1161.701 kb on + strand, within HP15_1132at 1161.709 kb on - strand, within HP15_1132at 1161.788 kb on + strand, within HP15_1132at 1161.854 kb on + strand, within HP15_1132at 1161.854 kb on + strand, within HP15_1132at 1161.929 kb on + strand, within HP15_1132at 1161.937 kb on - strand, within HP15_1132at 1161.964 kb on + strand, within HP15_1132at 1161.982 kb on - strand, within HP15_1132at 1162.080 kb on + strand, within HP15_1132at 1162.087 kb on + strand, within HP15_1132at 1162.205 kb on + strand, within HP15_1132at 1162.236 kb on + strand, within HP15_1132at 1162.436 kb on + strandat 1162.455 kb on + strandat 1162.481 kb on - strandat 1162.488 kb on + strandat 1162.498 kb on + strand, within HP15_1133at 1162.498 kb on + strand, within HP15_1133at 1162.506 kb on - strand, within HP15_1133at 1162.526 kb on + strand, within HP15_1133at 1162.526 kb on + strand, within HP15_1133at 1162.534 kb on - strand, within HP15_1133at 1162.633 kb on - strand, within HP15_1133at 1162.646 kb on + strand, within HP15_1133at 1162.646 kb on + strand, within HP15_1133at 1162.646 kb on + strand, within HP15_1133at 1162.654 kb on - strand, within HP15_1133at 1162.715 kb on + strand, within HP15_1133at 1162.820 kb on + strand, within HP15_1133at 1163.006 kb on + strand, within HP15_1133at 1163.006 kb on + strand, within HP15_1133at 1163.006 kb on + strand, within HP15_1133at 1163.014 kb on - strand, within HP15_1133at 1163.014 kb on - strand, within HP15_1133at 1163.014 kb on - strand, within HP15_1133at 1163.014 kb on - strand, within HP15_1133at 1163.014 kb on - strand, within HP15_1133at 1163.019 kb on - strand, within HP15_1133at 1163.085 kb on + strandat 1163.104 kb on + strandat 1163.152 kb on + strandat 1163.192 kb on - strandat 1163.236 kb on - strandat 1163.236 kb on - strandat 1163.236 kb on - strandat 1163.304 kb on + strandat 1163.307 kb on - strandat 1163.356 kb on - strandat 1163.364 kb on - strandat 1163.366 kb on - strandat 1163.539 kb on + strand, within HP15_1134at 1163.547 kb on - strand, within HP15_1134at 1163.573 kb on + strand, within HP15_1134at 1163.573 kb on + strand, within HP15_1134at 1163.583 kb on + strand, within HP15_1134at 1163.645 kb on + strand, within HP15_1134at 1163.672 kb on - strand, within HP15_1134at 1163.679 kb on + strand, within HP15_1134at 1163.692 kb on + strand, within HP15_1134at 1163.792 kb on + strandat 1163.908 kb on + strandat 1163.945 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM
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1,161,524 + HP15_1132 0.40 -1.2
1,161,524 + HP15_1132 0.40 +0.1
1,161,571 + HP15_1132 0.44 -0.5
1,161,701 + HP15_1132 0.52 -0.5
1,161,709 - HP15_1132 0.53 -0.3
1,161,788 + HP15_1132 0.58 -1.2
1,161,854 + HP15_1132 0.62 -0.3
1,161,854 + HP15_1132 0.62 -0.5
1,161,929 + HP15_1132 0.67 -0.9
1,161,937 - HP15_1132 0.68 -0.7
1,161,964 + HP15_1132 0.69 -0.6
1,161,982 - HP15_1132 0.71 -1.0
1,162,080 + HP15_1132 0.77 -2.1
1,162,087 + HP15_1132 0.78 +0.2
1,162,205 + HP15_1132 0.85 +0.3
1,162,236 + HP15_1132 0.87 +0.5
1,162,436 + -1.8
1,162,455 + -0.7
1,162,481 - +0.7
1,162,488 + -0.4
1,162,498 + HP15_1133 0.11 -1.0
1,162,498 + HP15_1133 0.11 -0.3
1,162,506 - HP15_1133 0.12 -0.7
1,162,526 + HP15_1133 0.15 -0.4
1,162,526 + HP15_1133 0.15 -1.2
1,162,534 - HP15_1133 0.16 +0.2
1,162,633 - HP15_1133 0.30 -1.1
1,162,646 + HP15_1133 0.32 -0.3
1,162,646 + HP15_1133 0.32 -0.8
1,162,646 + HP15_1133 0.32 +0.5
1,162,654 - HP15_1133 0.33 -1.6
1,162,715 + HP15_1133 0.42 -0.4
1,162,820 + HP15_1133 0.57 -0.5
1,163,006 + HP15_1133 0.83 -0.5
1,163,006 + HP15_1133 0.83 -1.1
1,163,006 + HP15_1133 0.83 -1.0
1,163,014 - HP15_1133 0.84 +0.4
1,163,014 - HP15_1133 0.84 -0.6
1,163,014 - HP15_1133 0.84 +0.4
1,163,014 - HP15_1133 0.84 -1.0
1,163,014 - HP15_1133 0.84 -0.4
1,163,019 - HP15_1133 0.85 -1.2
1,163,085 + +0.4
1,163,104 + +1.3
1,163,152 + -0.2
1,163,192 - +0.1
1,163,236 - -0.4
1,163,236 - -2.7
1,163,236 - -0.8
1,163,304 + +0.2
1,163,307 - -0.7
1,163,356 - -0.5
1,163,364 - +0.5
1,163,366 - +0.3
1,163,539 + HP15_1134 0.44 -0.3
1,163,547 - HP15_1134 0.46 +0.5
1,163,573 + HP15_1134 0.53 -0.3
1,163,573 + HP15_1134 0.53 -0.2
1,163,583 + HP15_1134 0.55 -0.4
1,163,645 + HP15_1134 0.71 -0.4
1,163,672 - HP15_1134 0.78 -0.8
1,163,679 + HP15_1134 0.80 -0.3
1,163,692 + HP15_1134 0.83 -0.3
1,163,792 + -1.7
1,163,908 + -0.4
1,163,945 - -0.1

Or see this region's nucleotide sequence