Experiment: m.b. Aluminum chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1085 and HP15_1086 are separated by 85 nucleotides HP15_1086 and HP15_1087 are separated by 285 nucleotides HP15_1087 and HP15_1088 are separated by 277 nucleotides HP15_1088 and HP15_1089 are separated by 141 nucleotides
HP15_1085: HP15_1085 - conserved hypothetical protein, at 1,113,480 to 1,113,923
_1085
HP15_1086: HP15_1086 - hypothetical protein, at 1,114,009 to 1,114,248
_1086
HP15_1087: HP15_1087 - prophage CP4-57 regulatory, at 1,114,534 to 1,114,761
_1087
HP15_1088: HP15_1088 - conserved hypothetical protein, membrane, at 1,115,039 to 1,115,383
_1088
HP15_1089: HP15_1089 - conserved hypothetical protein, at 1,115,525 to 1,116,487
_1089
Position (kb)
1114
1115 Strain fitness (log2 ratio)
-1
0
1
2 at 1113.636 kb on + strand, within HP15_1085 at 1113.672 kb on - strand, within HP15_1085 at 1113.714 kb on - strand, within HP15_1085 at 1113.746 kb on - strand, within HP15_1085 at 1113.762 kb on - strand, within HP15_1085 at 1113.769 kb on - strand, within HP15_1085 at 1113.810 kb on + strand, within HP15_1085 at 1113.824 kb on + strand, within HP15_1085 at 1113.824 kb on + strand, within HP15_1085 at 1113.824 kb on + strand, within HP15_1085 at 1113.824 kb on + strand, within HP15_1085 at 1113.832 kb on - strand, within HP15_1085 at 1113.850 kb on - strand, within HP15_1085 at 1113.908 kb on + strand at 1113.911 kb on - strand at 1113.933 kb on - strand at 1114.051 kb on - strand, within HP15_1086 at 1114.061 kb on - strand, within HP15_1086 at 1114.372 kb on - strand at 1114.501 kb on + strand at 1114.501 kb on - strand at 1114.541 kb on + strand at 1114.610 kb on - strand, within HP15_1087 at 1114.658 kb on - strand, within HP15_1087 at 1114.660 kb on + strand, within HP15_1087 at 1114.872 kb on - strand at 1115.216 kb on - strand, within HP15_1088 at 1115.249 kb on + strand, within HP15_1088 at 1115.259 kb on - strand, within HP15_1088 at 1115.288 kb on - strand, within HP15_1088 at 1115.433 kb on + strand at 1115.433 kb on + strand at 1115.566 kb on - strand at 1115.633 kb on + strand, within HP15_1089 at 1115.666 kb on - strand, within HP15_1089 at 1115.666 kb on - strand, within HP15_1089 at 1115.734 kb on - strand, within HP15_1089 at 1115.743 kb on + strand, within HP15_1089
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM remove 1,113,636 + HP15_1085 0.35 -0.9 1,113,672 - HP15_1085 0.43 -0.3 1,113,714 - HP15_1085 0.53 -1.0 1,113,746 - HP15_1085 0.60 -0.3 1,113,762 - HP15_1085 0.64 -1.4 1,113,769 - HP15_1085 0.65 -0.5 1,113,810 + HP15_1085 0.74 -0.4 1,113,824 + HP15_1085 0.77 -0.1 1,113,824 + HP15_1085 0.77 -0.3 1,113,824 + HP15_1085 0.77 +0.5 1,113,824 + HP15_1085 0.77 -0.3 1,113,832 - HP15_1085 0.79 -0.7 1,113,850 - HP15_1085 0.83 -0.4 1,113,908 + -0.1 1,113,911 - -0.7 1,113,933 - -0.7 1,114,051 - HP15_1086 0.17 +0.1 1,114,061 - HP15_1086 0.22 +0.3 1,114,372 - +0.2 1,114,501 + -1.1 1,114,501 - +0.8 1,114,541 + -0.0 1,114,610 - HP15_1087 0.33 -0.2 1,114,658 - HP15_1087 0.54 +0.9 1,114,660 + HP15_1087 0.55 +1.0 1,114,872 - +0.1 1,115,216 - HP15_1088 0.51 -0.2 1,115,249 + HP15_1088 0.61 +2.0 1,115,259 - HP15_1088 0.64 -0.5 1,115,288 - HP15_1088 0.72 +0.1 1,115,433 + -0.2 1,115,433 + +0.4 1,115,566 - +0.4 1,115,633 + HP15_1089 0.11 -0.9 1,115,666 - HP15_1089 0.15 +0.2 1,115,666 - HP15_1089 0.15 -0.4 1,115,734 - HP15_1089 0.22 +0.3 1,115,743 + HP15_1089 0.23 -0.4
Or see this region's nucleotide sequence