Experiment: m.b. Aluminum chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1038 and HP15_1039 are separated by 152 nucleotides HP15_1039 and HP15_1040 are separated by 103 nucleotides
HP15_1038: HP15_1038 - sensory box histidine kinase, at 1,057,070 to 1,058,584
_1038
HP15_1039: HP15_1039 - acyl-CoA synthetase, at 1,058,737 to 1,060,365
_1039
HP15_1040: HP15_1040 - conserved hypothetical protein, membrane, at 1,060,469 to 1,061,839
_1040
Position (kb)
1058
1059
1060
1061 Strain fitness (log2 ratio)
-1
0
1 at 1057.881 kb on - strand, within HP15_1038 at 1057.881 kb on - strand, within HP15_1038 at 1058.271 kb on + strand, within HP15_1038 at 1058.279 kb on - strand, within HP15_1038 at 1058.282 kb on + strand, within HP15_1038 at 1058.282 kb on + strand, within HP15_1038 at 1058.318 kb on + strand, within HP15_1038 at 1058.389 kb on + strand, within HP15_1038 at 1058.433 kb on + strand at 1058.470 kb on + strand at 1058.541 kb on + strand at 1058.662 kb on - strand at 1058.662 kb on - strand at 1058.709 kb on + strand at 1058.717 kb on - strand at 1058.876 kb on + strand at 1059.019 kb on + strand, within HP15_1039 at 1059.027 kb on - strand, within HP15_1039 at 1059.027 kb on - strand, within HP15_1039 at 1059.027 kb on - strand, within HP15_1039 at 1059.042 kb on + strand, within HP15_1039 at 1059.084 kb on + strand, within HP15_1039 at 1059.084 kb on + strand, within HP15_1039 at 1059.092 kb on - strand, within HP15_1039 at 1059.092 kb on - strand, within HP15_1039 at 1059.164 kb on + strand, within HP15_1039 at 1059.199 kb on + strand, within HP15_1039 at 1059.205 kb on - strand, within HP15_1039 at 1059.379 kb on + strand, within HP15_1039 at 1059.414 kb on + strand, within HP15_1039 at 1059.422 kb on - strand, within HP15_1039 at 1059.470 kb on + strand, within HP15_1039 at 1059.470 kb on - strand, within HP15_1039 at 1059.550 kb on + strand, within HP15_1039 at 1059.555 kb on + strand, within HP15_1039 at 1059.558 kb on - strand, within HP15_1039 at 1059.563 kb on - strand, within HP15_1039 at 1059.669 kb on + strand, within HP15_1039 at 1059.726 kb on - strand, within HP15_1039 at 1059.730 kb on + strand, within HP15_1039 at 1059.951 kb on + strand, within HP15_1039 at 1060.270 kb on + strand at 1060.299 kb on + strand at 1060.307 kb on - strand at 1060.362 kb on - strand at 1060.362 kb on - strand at 1060.496 kb on - strand at 1060.508 kb on - strand at 1060.509 kb on - strand at 1060.652 kb on + strand, within HP15_1040 at 1060.660 kb on - strand, within HP15_1040 at 1060.660 kb on - strand, within HP15_1040 at 1060.660 kb on - strand, within HP15_1040 at 1060.660 kb on - strand, within HP15_1040 at 1060.669 kb on + strand, within HP15_1040 at 1060.683 kb on + strand, within HP15_1040 at 1060.700 kb on + strand, within HP15_1040 at 1060.736 kb on - strand, within HP15_1040 at 1060.751 kb on + strand, within HP15_1040 at 1060.759 kb on - strand, within HP15_1040 at 1060.767 kb on - strand, within HP15_1040 at 1060.877 kb on - strand, within HP15_1040 at 1060.931 kb on + strand, within HP15_1040 at 1061.008 kb on + strand, within HP15_1040 at 1061.015 kb on - strand, within HP15_1040 at 1061.085 kb on + strand, within HP15_1040 at 1061.146 kb on + strand, within HP15_1040
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM remove 1,057,881 - HP15_1038 0.54 +0.9 1,057,881 - HP15_1038 0.54 -0.0 1,058,271 + HP15_1038 0.79 +0.6 1,058,279 - HP15_1038 0.80 +0.4 1,058,282 + HP15_1038 0.80 +0.1 1,058,282 + HP15_1038 0.80 -0.3 1,058,318 + HP15_1038 0.82 -0.8 1,058,389 + HP15_1038 0.87 -0.4 1,058,433 + -0.8 1,058,470 + -0.3 1,058,541 + +0.1 1,058,662 - +0.7 1,058,662 - -0.0 1,058,709 + +1.1 1,058,717 - +0.3 1,058,876 + +0.1 1,059,019 + HP15_1039 0.17 +0.8 1,059,027 - HP15_1039 0.18 +0.4 1,059,027 - HP15_1039 0.18 +0.3 1,059,027 - HP15_1039 0.18 +1.6 1,059,042 + HP15_1039 0.19 +0.6 1,059,084 + HP15_1039 0.21 +0.4 1,059,084 + HP15_1039 0.21 +0.5 1,059,092 - HP15_1039 0.22 +0.7 1,059,092 - HP15_1039 0.22 +0.9 1,059,164 + HP15_1039 0.26 +0.9 1,059,199 + HP15_1039 0.28 +1.0 1,059,205 - HP15_1039 0.29 +0.6 1,059,379 + HP15_1039 0.39 -0.7 1,059,414 + HP15_1039 0.42 +0.5 1,059,422 - HP15_1039 0.42 -0.1 1,059,470 + HP15_1039 0.45 +0.9 1,059,470 - HP15_1039 0.45 +0.5 1,059,550 + HP15_1039 0.50 -0.4 1,059,555 + HP15_1039 0.50 +0.8 1,059,558 - HP15_1039 0.50 +1.1 1,059,563 - HP15_1039 0.51 +0.7 1,059,669 + HP15_1039 0.57 +1.5 1,059,726 - HP15_1039 0.61 -0.2 1,059,730 + HP15_1039 0.61 +0.3 1,059,951 + HP15_1039 0.75 -0.6 1,060,270 + -0.1 1,060,299 + +0.6 1,060,307 - +1.3 1,060,362 - +0.9 1,060,362 - +0.5 1,060,496 - +0.3 1,060,508 - -0.4 1,060,509 - +0.6 1,060,652 + HP15_1040 0.13 +0.3 1,060,660 - HP15_1040 0.14 +0.3 1,060,660 - HP15_1040 0.14 -0.1 1,060,660 - HP15_1040 0.14 +0.3 1,060,660 - HP15_1040 0.14 +0.4 1,060,669 + HP15_1040 0.15 +0.6 1,060,683 + HP15_1040 0.16 +0.9 1,060,700 + HP15_1040 0.17 +1.2 1,060,736 - HP15_1040 0.19 +0.3 1,060,751 + HP15_1040 0.21 +0.7 1,060,759 - HP15_1040 0.21 -0.4 1,060,767 - HP15_1040 0.22 +0.5 1,060,877 - HP15_1040 0.30 +0.4 1,060,931 + HP15_1040 0.34 +0.3 1,061,008 + HP15_1040 0.39 +0.4 1,061,015 - HP15_1040 0.40 +0.2 1,061,085 + HP15_1040 0.45 -0.7 1,061,146 + HP15_1040 0.49 -0.0
Or see this region's nucleotide sequence