Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3071

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3070 and DvMF_3071 are separated by 467 nucleotidesDvMF_3071 and DvMF_3072 are separated by 550 nucleotides DvMF_3070: DvMF_3070 - hypothetical protein (RefSeq), at 3,875,584 to 3,876,147 _3070 DvMF_3071: DvMF_3071 - type IV pilus assembly PilZ (RefSeq), at 3,876,615 to 3,877,106 _3071 DvMF_3072: DvMF_3072 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,877,657 to 3,879,486 _3072 Position (kb) 3876 3877 3878Strain fitness (log2 ratio) -2 -1 0 1at 3875.708 kb on - strand, within DvMF_3070at 3875.741 kb on - strand, within DvMF_3070at 3875.741 kb on - strand, within DvMF_3070at 3875.984 kb on + strand, within DvMF_3070at 3876.205 kb on - strandat 3876.346 kb on + strandat 3876.379 kb on + strandat 3876.865 kb on + strand, within DvMF_3071at 3877.263 kb on + strandat 3877.271 kb on - strandat 3877.577 kb on + strandat 3877.689 kb on + strandat 3877.977 kb on - strand, within DvMF_3072

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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3,875,708 - DvMF_3070 0.22 -1.2
3,875,741 - DvMF_3070 0.28 -1.3
3,875,741 - DvMF_3070 0.28 -2.0
3,875,984 + DvMF_3070 0.71 -0.4
3,876,205 - -0.2
3,876,346 + -0.1
3,876,379 + -1.9
3,876,865 + DvMF_3071 0.51 -0.6
3,877,263 + -0.5
3,877,271 - +0.0
3,877,577 + +0.2
3,877,689 + +0.2
3,877,977 - DvMF_3072 0.17 +0.5

Or see this region's nucleotide sequence