Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2071

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2070 and DvMF_2071 overlap by 4 nucleotidesDvMF_2071 and DvMF_2072 are separated by 74 nucleotides DvMF_2070: DvMF_2070 - hypothetical protein (RefSeq), at 2,569,907 to 2,571,382 _2070 DvMF_2071: DvMF_2071 - hypothetical protein (RefSeq), at 2,571,379 to 2,572,233 _2071 DvMF_2072: DvMF_2072 - hypothetical protein (RefSeq), at 2,572,308 to 2,573,084 _2072 Position (kb) 2571 2572 2573Strain fitness (log2 ratio) -1 0 1at 2570.886 kb on + strand, within DvMF_2070at 2571.036 kb on + strand, within DvMF_2070at 2571.192 kb on + strand, within DvMF_2070at 2571.193 kb on - strand, within DvMF_2070at 2571.292 kb on + strandat 2571.473 kb on + strand, within DvMF_2071at 2571.488 kb on + strand, within DvMF_2071at 2571.488 kb on + strand, within DvMF_2071at 2571.488 kb on + strand, within DvMF_2071at 2571.687 kb on - strand, within DvMF_2071at 2571.861 kb on - strand, within DvMF_2071at 2572.197 kb on + strandat 2572.339 kb on + strandat 2572.429 kb on + strand, within DvMF_2072at 2572.442 kb on - strand, within DvMF_2072at 2572.670 kb on + strand, within DvMF_2072at 2572.803 kb on + strand, within DvMF_2072at 2573.128 kb on + strandat 2573.136 kb on - strandat 2573.192 kb on + strandat 2573.213 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,570,886 + DvMF_2070 0.66 -0.2
2,571,036 + DvMF_2070 0.76 -0.4
2,571,192 + DvMF_2070 0.87 -0.2
2,571,193 - DvMF_2070 0.87 +0.0
2,571,292 + -0.3
2,571,473 + DvMF_2071 0.11 -0.1
2,571,488 + DvMF_2071 0.13 -0.1
2,571,488 + DvMF_2071 0.13 -0.1
2,571,488 + DvMF_2071 0.13 -0.3
2,571,687 - DvMF_2071 0.36 -0.2
2,571,861 - DvMF_2071 0.56 +0.6
2,572,197 + -0.1
2,572,339 + -0.7
2,572,429 + DvMF_2072 0.16 -0.2
2,572,442 - DvMF_2072 0.17 -0.8
2,572,670 + DvMF_2072 0.47 -0.3
2,572,803 + DvMF_2072 0.64 -0.6
2,573,128 + -0.3
2,573,136 - -0.1
2,573,192 + -0.1
2,573,213 - -0.1

Or see this region's nucleotide sequence