Experiment: Defined MoLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1719 and DvMF_1720 are separated by 470 nucleotides DvMF_1720 and DvMF_1721 are separated by 317 nucleotides
DvMF_1719: DvMF_1719 - metal dependent phosphohydrolase (RefSeq), at 2,101,478 to 2,102,686
_1719
DvMF_1720: DvMF_1720 - diguanylate phosphodiesterase (RefSeq), at 2,103,157 to 2,104,395
_1720
DvMF_1721: DvMF_1721 - Phenylacetate--CoA ligase (RefSeq), at 2,104,713 to 2,106,008
_1721
Position (kb)
2103
2104
2105 Strain fitness (log2 ratio)
-1
0
1 at 2102.204 kb on - strand, within DvMF_1719 at 2102.283 kb on + strand, within DvMF_1719 at 2102.333 kb on + strand, within DvMF_1719 at 2102.341 kb on - strand, within DvMF_1719 at 2102.490 kb on - strand, within DvMF_1719 at 2102.603 kb on - strand at 2103.178 kb on - strand at 2103.271 kb on - strand at 2103.271 kb on - strand at 2103.457 kb on + strand, within DvMF_1720 at 2103.465 kb on - strand, within DvMF_1720 at 2103.467 kb on + strand, within DvMF_1720 at 2103.586 kb on - strand, within DvMF_1720 at 2103.845 kb on - strand, within DvMF_1720 at 2103.918 kb on - strand, within DvMF_1720 at 2103.940 kb on + strand, within DvMF_1720 at 2104.260 kb on + strand, within DvMF_1720 at 2104.339 kb on + strand at 2104.417 kb on + strand at 2104.996 kb on - strand, within DvMF_1721 at 2105.206 kb on - strand, within DvMF_1721 at 2105.236 kb on + strand, within DvMF_1721 at 2105.241 kb on + strand, within DvMF_1721 at 2105.244 kb on - strand, within DvMF_1721
Per-strain Table
Position Strand Gene LocusTag Fraction Defined MoLS4 remove 2,102,204 - DvMF_1719 0.60 -0.1 2,102,283 + DvMF_1719 0.67 +0.1 2,102,333 + DvMF_1719 0.71 -0.1 2,102,341 - DvMF_1719 0.71 -0.1 2,102,490 - DvMF_1719 0.84 -0.1 2,102,603 - -0.4 2,103,178 - +0.3 2,103,271 - +0.3 2,103,271 - -0.5 2,103,457 + DvMF_1720 0.24 -0.4 2,103,465 - DvMF_1720 0.25 -0.4 2,103,467 + DvMF_1720 0.25 -0.1 2,103,586 - DvMF_1720 0.35 -0.3 2,103,845 - DvMF_1720 0.56 -0.3 2,103,918 - DvMF_1720 0.61 -0.6 2,103,940 + DvMF_1720 0.63 +0.0 2,104,260 + DvMF_1720 0.89 +0.1 2,104,339 + -0.3 2,104,417 + -0.2 2,104,996 - DvMF_1721 0.22 -0.6 2,105,206 - DvMF_1721 0.38 -0.1 2,105,236 + DvMF_1721 0.40 -0.1 2,105,241 + DvMF_1721 0.41 -0.8 2,105,244 - DvMF_1721 0.41 -0.0
Or see this region's nucleotide sequence