Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1546

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1544 and DvMF_1545 are separated by 180 nucleotidesDvMF_1545 and DvMF_1546 are separated by 5 nucleotidesDvMF_1546 and DvMF_1547 are separated by 153 nucleotides DvMF_1544: DvMF_1544 - response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 1,905,797 to 1,908,016 _1544 DvMF_1545: DvMF_1545 - hypothetical protein (RefSeq), at 1,908,197 to 1,908,547 _1545 DvMF_1546: DvMF_1546 - hypothetical protein (RefSeq), at 1,908,553 to 1,909,158 _1546 DvMF_1547: DvMF_1547 - glycosyl transferase family 9 (RefSeq), at 1,909,312 to 1,911,069 _1547 Position (kb) 1908 1909 1910Strain fitness (log2 ratio) -1 0 1at 1907.605 kb on + strand, within DvMF_1544at 1907.639 kb on + strand, within DvMF_1544at 1907.652 kb on - strand, within DvMF_1544at 1907.838 kb on - strandat 1908.202 kb on - strandat 1908.202 kb on - strandat 1908.217 kb on + strandat 1908.225 kb on - strandat 1908.588 kb on + strandat 1909.282 kb on - strandat 1909.430 kb on - strandat 1909.610 kb on + strand, within DvMF_1547at 1909.610 kb on + strand, within DvMF_1547at 1909.610 kb on + strand, within DvMF_1547at 1909.959 kb on - strand, within DvMF_1547at 1910.033 kb on + strand, within DvMF_1547at 1910.092 kb on + strand, within DvMF_1547at 1910.131 kb on + strand, within DvMF_1547

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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1,907,605 + DvMF_1544 0.81 +0.1
1,907,639 + DvMF_1544 0.83 -0.4
1,907,652 - DvMF_1544 0.84 +0.2
1,907,838 - +0.2
1,908,202 - -0.5
1,908,202 - -0.9
1,908,217 + -0.4
1,908,225 - -0.7
1,908,588 + -0.6
1,909,282 - -0.4
1,909,430 - -0.2
1,909,610 + DvMF_1547 0.17 -0.3
1,909,610 + DvMF_1547 0.17 -0.3
1,909,610 + DvMF_1547 0.17 -0.5
1,909,959 - DvMF_1547 0.37 -0.3
1,910,033 + DvMF_1547 0.41 +0.8
1,910,092 + DvMF_1547 0.44 -0.2
1,910,131 + DvMF_1547 0.47 -0.2

Or see this region's nucleotide sequence