Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1382

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1381 and DvMF_1382 are separated by 295 nucleotidesDvMF_1382 and DvMF_1383 are separated by 387 nucleotides DvMF_1381: DvMF_1381 - glucose-1-phosphate thymidylyltransferase (RefSeq), at 1,690,621 to 1,691,499 _1381 DvMF_1382: DvMF_1382 - hypothetical protein (RefSeq), at 1,691,795 to 1,691,935 _1382 DvMF_1383: DvMF_1383 - RNA methyltransferase, TrmA family (RefSeq), at 1,692,323 to 1,693,762 _1383 Position (kb) 1691 1692Strain fitness (log2 ratio) -1 0 1at 1691.547 kb on + strandat 1691.601 kb on - strandat 1691.707 kb on - strandat 1691.827 kb on + strand, within DvMF_1382at 1692.009 kb on + strandat 1692.019 kb on + strandat 1692.142 kb on - strandat 1692.223 kb on - strandat 1692.587 kb on + strand, within DvMF_1383at 1692.592 kb on + strand, within DvMF_1383at 1692.592 kb on + strand, within DvMF_1383at 1692.600 kb on - strand, within DvMF_1383at 1692.613 kb on - strand, within DvMF_1383

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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1,691,547 + -0.2
1,691,601 - -0.3
1,691,707 - -0.6
1,691,827 + DvMF_1382 0.23 -1.0
1,692,009 + -0.3
1,692,019 + -1.1
1,692,142 - -0.4
1,692,223 - -0.7
1,692,587 + DvMF_1383 0.18 -0.2
1,692,592 + DvMF_1383 0.19 -0.0
1,692,592 + DvMF_1383 0.19 -0.1
1,692,600 - DvMF_1383 0.19 -0.2
1,692,613 - DvMF_1383 0.20 -0.2

Or see this region's nucleotide sequence