Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0008

Experiment: MoYLS4 with Mercury 10uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntasnS and DVU0008 are separated by 157 nucleotidesDVU0008 and dctM are separated by 460 nucleotides DVU0007: asnS - asparaginyl-tRNA synthetase (TIGR), at 9,552 to 10,937 asnS DVU0008: DVU0008 - hypothetical protein (TIGR), at 11,095 to 11,220 DVU0008 DVU0009: dctM - DedA family protein (TIGR), at 11,681 to 12,961 dctM Position (kb) 11 12Strain fitness (log2 ratio) -2 -1 0 1at 10.115 kb on + strand, within asnSat 10.130 kb on + strand, within asnSat 10.138 kb on - strand, within asnSat 10.269 kb on + strand, within asnSat 10.269 kb on + strand, within asnSat 10.269 kb on + strand, within asnSat 10.269 kb on + strand, within asnSat 10.269 kb on + strand, within asnSat 10.270 kb on + strand, within asnSat 10.270 kb on + strand, within asnSat 10.277 kb on - strand, within asnSat 10.277 kb on - strand, within asnSat 10.277 kb on - strand, within asnSat 10.278 kb on - strand, within asnSat 10.278 kb on - strand, within asnSat 10.278 kb on - strand, within asnSat 10.278 kb on - strand, within asnSat 10.306 kb on + strand, within asnSat 10.314 kb on - strand, within asnSat 10.314 kb on - strand, within asnSat 10.316 kb on + strand, within asnSat 10.325 kb on + strand, within asnSat 10.382 kb on + strand, within asnSat 10.390 kb on - strand, within asnSat 10.422 kb on + strand, within asnSat 10.443 kb on + strand, within asnSat 10.443 kb on - strand, within asnSat 10.574 kb on + strand, within asnSat 10.576 kb on + strand, within asnSat 10.582 kb on - strand, within asnSat 10.608 kb on - strand, within asnSat 10.629 kb on - strand, within asnSat 10.629 kb on - strand, within asnSat 10.660 kb on - strand, within asnSat 10.714 kb on + strand, within asnSat 10.714 kb on + strand, within asnSat 10.738 kb on + strand, within asnSat 10.747 kb on + strand, within asnSat 10.789 kb on + strand, within asnSat 10.797 kb on - strand, within asnSat 10.805 kb on + strandat 10.887 kb on + strandat 10.956 kb on - strandat 11.040 kb on + strandat 11.045 kb on - strandat 11.069 kb on - strandat 11.076 kb on - strandat 11.202 kb on - strand, within DVU0008at 11.426 kb on + strandat 11.500 kb on - strandat 11.547 kb on - strandat 11.595 kb on + strandat 11.603 kb on - strandat 11.611 kb on + strandat 11.611 kb on + strandat 11.612 kb on - strandat 11.619 kb on - strandat 11.619 kb on - strandat 11.619 kb on - strandat 11.621 kb on + strandat 11.700 kb on + strandat 11.700 kb on + strandat 11.751 kb on + strandat 11.794 kb on - strandat 11.889 kb on - strand, within dctMat 11.977 kb on - strand, within dctMat 12.095 kb on - strand, within dctMat 12.096 kb on + strand, within dctMat 12.133 kb on - strand, within dctMat 12.214 kb on + strand, within dctM

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Mercury 10uM
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10,115 + asnS DVU0007 0.41 +1.5
10,130 + asnS DVU0007 0.42 -0.5
10,138 - asnS DVU0007 0.42 -0.0
10,269 + asnS DVU0007 0.52 -0.5
10,269 + asnS DVU0007 0.52 +0.5
10,269 + asnS DVU0007 0.52 -0.1
10,269 + asnS DVU0007 0.52 -1.2
10,269 + asnS DVU0007 0.52 +0.5
10,270 + asnS DVU0007 0.52 -0.3
10,270 + asnS DVU0007 0.52 -1.5
10,277 - asnS DVU0007 0.52 -1.9
10,277 - asnS DVU0007 0.52 -0.5
10,277 - asnS DVU0007 0.52 +0.9
10,278 - asnS DVU0007 0.52 +0.4
10,278 - asnS DVU0007 0.52 +0.1
10,278 - asnS DVU0007 0.52 -2.3
10,278 - asnS DVU0007 0.52 +1.1
10,306 + asnS DVU0007 0.54 +0.6
10,314 - asnS DVU0007 0.55 +0.3
10,314 - asnS DVU0007 0.55 +0.1
10,316 + asnS DVU0007 0.55 -1.5
10,325 + asnS DVU0007 0.56 -0.4
10,382 + asnS DVU0007 0.60 -0.5
10,390 - asnS DVU0007 0.60 +0.2
10,422 + asnS DVU0007 0.63 +1.2
10,443 + asnS DVU0007 0.64 -0.1
10,443 - asnS DVU0007 0.64 +0.5
10,574 + asnS DVU0007 0.74 -0.0
10,576 + asnS DVU0007 0.74 -0.1
10,582 - asnS DVU0007 0.74 +0.0
10,608 - asnS DVU0007 0.76 -0.4
10,629 - asnS DVU0007 0.78 +0.2
10,629 - asnS DVU0007 0.78 -0.2
10,660 - asnS DVU0007 0.80 -0.2
10,714 + asnS DVU0007 0.84 -0.4
10,714 + asnS DVU0007 0.84 -0.4
10,738 + asnS DVU0007 0.86 -0.2
10,747 + asnS DVU0007 0.86 -0.0
10,789 + asnS DVU0007 0.89 -0.1
10,797 - asnS DVU0007 0.90 -2.2
10,805 + +0.4
10,887 + +0.2
10,956 - -0.4
11,040 + +0.9
11,045 - -0.2
11,069 - -0.4
11,076 - -0.3
11,202 - DVU0008 0.85 +0.7
11,426 + +0.5
11,500 - -1.1
11,547 - +0.2
11,595 + -0.2
11,603 - +1.3
11,611 + -0.1
11,611 + +0.3
11,612 - -0.2
11,619 - -2.7
11,619 - -0.9
11,619 - -0.1
11,621 + -0.3
11,700 + -0.3
11,700 + -0.4
11,751 + +0.5
11,794 - +0.1
11,889 - dctM DVU0009 0.16 +1.0
11,977 - dctM DVU0009 0.23 -0.7
12,095 - dctM DVU0009 0.32 -1.2
12,096 + dctM DVU0009 0.32 +0.0
12,133 - dctM DVU0009 0.35 -0.1
12,214 + dctM DVU0009 0.42 -0.9

Or see this region's nucleotide sequence