Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3112

Experiment: MoYLS4 with Mercury 10uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU3111 and DVU3112 are separated by 47 nucleotidesDVU3112 and carA are separated by 50 nucleotides DVU3111: DVU3111 - transcriptional regulator, Crp/Fnr family (TIGR), at 3,260,648 to 3,261,457 DVU3111 DVU3112: DVU3112 - TPR domain protein (TIGR), at 3,261,505 to 3,262,308 DVU3112 DVU3113: carA - carbamoyl-phosphate synthase, small subunit (TIGR), at 3,262,359 to 3,263,486 carA Position (kb) 3261 3262 3263Strain fitness (log2 ratio) -2 -1 0 1at 3260.614 kb on - strandat 3260.614 kb on - strandat 3260.620 kb on + strandat 3260.628 kb on - strandat 3260.695 kb on + strandat 3260.722 kb on + strandat 3260.732 kb on + strand, within DVU3111at 3260.805 kb on - strand, within DVU3111at 3260.950 kb on - strand, within DVU3111at 3261.022 kb on - strand, within DVU3111at 3261.075 kb on - strand, within DVU3111at 3261.207 kb on - strand, within DVU3111at 3261.212 kb on - strand, within DVU3111at 3261.279 kb on - strand, within DVU3111at 3261.313 kb on - strand, within DVU3111at 3261.377 kb on + strandat 3261.390 kb on - strandat 3261.397 kb on + strandat 3261.404 kb on - strandat 3261.430 kb on - strandat 3261.433 kb on + strandat 3261.435 kb on - strandat 3261.489 kb on + strandat 3261.497 kb on - strandat 3261.668 kb on + strand, within DVU3112at 3261.668 kb on + strand, within DVU3112at 3261.688 kb on - strand, within DVU3112at 3261.737 kb on - strand, within DVU3112at 3261.774 kb on + strand, within DVU3112at 3261.774 kb on + strand, within DVU3112at 3261.774 kb on + strand, within DVU3112at 3261.774 kb on + strand, within DVU3112at 3261.786 kb on + strand, within DVU3112at 3261.863 kb on - strand, within DVU3112at 3262.045 kb on - strand, within DVU3112at 3262.088 kb on + strand, within DVU3112

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Mercury 10uM
remove
3,260,614 - -1.5
3,260,614 - -0.9
3,260,620 + -0.6
3,260,628 - -0.6
3,260,695 + -0.7
3,260,722 + +0.1
3,260,732 + DVU3111 0.10 -1.2
3,260,805 - DVU3111 0.19 +0.3
3,260,950 - DVU3111 0.37 -0.4
3,261,022 - DVU3111 0.46 -0.1
3,261,075 - DVU3111 0.53 -1.3
3,261,207 - DVU3111 0.69 +1.5
3,261,212 - DVU3111 0.70 -0.5
3,261,279 - DVU3111 0.78 +0.1
3,261,313 - DVU3111 0.82 +0.4
3,261,377 + -0.3
3,261,390 - -1.9
3,261,397 + +0.5
3,261,404 - -0.0
3,261,430 - +0.2
3,261,433 + +0.2
3,261,435 - -0.5
3,261,489 + -0.4
3,261,497 - -0.4
3,261,668 + DVU3112 0.20 +1.2
3,261,668 + DVU3112 0.20 -1.2
3,261,688 - DVU3112 0.23 -0.5
3,261,737 - DVU3112 0.29 -1.2
3,261,774 + DVU3112 0.33 -0.7
3,261,774 + DVU3112 0.33 -1.4
3,261,774 + DVU3112 0.33 -1.1
3,261,774 + DVU3112 0.33 -0.2
3,261,786 + DVU3112 0.35 -0.8
3,261,863 - DVU3112 0.45 -0.2
3,262,045 - DVU3112 0.67 -0.8
3,262,088 + DVU3112 0.73 -0.1

Or see this region's nucleotide sequence