Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2893

Experiment: MoYLS4 with Mercury 10uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnikR and DVU2892 are separated by 4 nucleotidesDVU2892 and flgG are separated by 47 nucleotidesflgG and flrA are separated by 277 nucleotides DVU2891: nikR - nickel responsive regulator (TIGR), at 2,988,755 to 2,989,174 nikR DVU2892: DVU2892 - conserved hypothetical protein (TIGR), at 2,989,179 to 2,989,979 DVU2892 DVU2893: flgG - flagellar basal-body rod protein, putative (TIGR), at 2,990,027 to 2,990,404 flgG DVU2894: flrA - sigma-54 dependent transcriptional regulator (TIGR), at 2,990,682 to 2,991,731 flrA Position (kb) 2990 2991Strain fitness (log2 ratio) -2 -1 0 1at 2989.055 kb on - strand, within nikRat 2989.104 kb on + strand, within nikRat 2989.113 kb on - strand, within nikRat 2989.140 kb on - strandat 2989.162 kb on + strandat 2989.162 kb on + strandat 2990.002 kb on - strandat 2990.060 kb on - strandat 2990.104 kb on + strand, within flgGat 2990.219 kb on + strand, within flgGat 2990.227 kb on - strand, within flgGat 2990.243 kb on + strand, within flgGat 2990.284 kb on + strand, within flgGat 2990.333 kb on + strand, within flgGat 2990.338 kb on + strand, within flgGat 2990.423 kb on + strandat 2990.446 kb on + strandat 2990.497 kb on + strandat 2990.498 kb on + strandat 2990.630 kb on + strandat 2990.695 kb on + strandat 2990.716 kb on + strandat 2990.778 kb on - strandat 2990.811 kb on + strand, within flrAat 2990.819 kb on - strand, within flrAat 2990.898 kb on + strand, within flrAat 2991.013 kb on + strand, within flrAat 2991.059 kb on + strand, within flrAat 2991.176 kb on + strand, within flrAat 2991.199 kb on + strand, within flrAat 2991.207 kb on - strand, within flrAat 2991.269 kb on + strand, within flrAat 2991.277 kb on + strand, within flrAat 2991.279 kb on + strand, within flrA

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Mercury 10uM
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2,989,055 - nikR DVU2891 0.71 -2.0
2,989,104 + nikR DVU2891 0.83 -0.4
2,989,113 - nikR DVU2891 0.85 -0.5
2,989,140 - -0.8
2,989,162 + +0.5
2,989,162 + -0.4
2,990,002 - -0.6
2,990,060 - -0.1
2,990,104 + flgG DVU2893 0.20 -0.9
2,990,219 + flgG DVU2893 0.51 +0.5
2,990,227 - flgG DVU2893 0.53 -0.1
2,990,243 + flgG DVU2893 0.57 -0.5
2,990,284 + flgG DVU2893 0.68 +0.5
2,990,333 + flgG DVU2893 0.81 -0.3
2,990,338 + flgG DVU2893 0.82 -0.4
2,990,423 + -0.6
2,990,446 + -0.2
2,990,497 + +0.2
2,990,498 + -0.1
2,990,630 + -1.5
2,990,695 + -0.1
2,990,716 + -1.1
2,990,778 - -0.3
2,990,811 + flrA DVU2894 0.12 -2.2
2,990,819 - flrA DVU2894 0.13 -0.4
2,990,898 + flrA DVU2894 0.21 +1.5
2,991,013 + flrA DVU2894 0.32 -0.4
2,991,059 + flrA DVU2894 0.36 +0.1
2,991,176 + flrA DVU2894 0.47 -0.1
2,991,199 + flrA DVU2894 0.49 -0.0
2,991,207 - flrA DVU2894 0.50 -0.3
2,991,269 + flrA DVU2894 0.56 +0.3
2,991,277 + flrA DVU2894 0.57 -0.2
2,991,279 + flrA DVU2894 0.57 +0.2

Or see this region's nucleotide sequence