Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2891

Experiment: MoYLS4 with Mercury 10uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2889 and DVU2890 are separated by 213 nucleotidesDVU2890 and nikR are separated by 18 nucleotidesnikR and DVU2892 are separated by 4 nucleotidesDVU2892 and flgG are separated by 47 nucleotides DVU2889: DVU2889 - BioY family protein (TIGR), at 2,987,291 to 2,987,839 DVU2889 DVU2890: DVU2890 - conserved domain protein (TIGR), at 2,988,053 to 2,988,736 DVU2890 DVU2891: nikR - nickel responsive regulator (TIGR), at 2,988,755 to 2,989,174 nikR DVU2892: DVU2892 - conserved hypothetical protein (TIGR), at 2,989,179 to 2,989,979 DVU2892 DVU2893: flgG - flagellar basal-body rod protein, putative (TIGR), at 2,990,027 to 2,990,404 flgG Position (kb) 2988 2989 2990Strain fitness (log2 ratio) -2 -1 0 1at 2987.899 kb on - strandat 2987.984 kb on - strandat 2988.085 kb on - strandat 2988.086 kb on + strandat 2988.086 kb on + strandat 2988.087 kb on + strandat 2988.224 kb on - strand, within DVU2890at 2988.293 kb on + strand, within DVU2890at 2988.331 kb on + strand, within DVU2890at 2988.370 kb on - strand, within DVU2890at 2988.385 kb on - strand, within DVU2890at 2988.391 kb on - strand, within DVU2890at 2988.396 kb on - strand, within DVU2890at 2988.396 kb on - strand, within DVU2890at 2988.443 kb on + strand, within DVU2890at 2988.451 kb on - strand, within DVU2890at 2988.480 kb on + strand, within DVU2890at 2988.586 kb on + strand, within DVU2890at 2988.702 kb on - strandat 2988.715 kb on + strandat 2988.846 kb on + strand, within nikRat 2988.937 kb on + strand, within nikRat 2988.949 kb on + strand, within nikRat 2988.957 kb on - strand, within nikRat 2988.968 kb on - strand, within nikRat 2989.055 kb on - strand, within nikRat 2989.104 kb on + strand, within nikRat 2989.113 kb on - strand, within nikRat 2989.140 kb on - strandat 2989.162 kb on + strandat 2989.162 kb on + strandat 2990.002 kb on - strandat 2990.060 kb on - strandat 2990.104 kb on + strand, within flgG

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Mercury 10uM
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2,987,899 - +0.1
2,987,984 - -0.0
2,988,085 - -0.0
2,988,086 + +1.1
2,988,086 + +1.0
2,988,087 + +1.1
2,988,224 - DVU2890 0.25 +1.5
2,988,293 + DVU2890 0.35 -0.2
2,988,331 + DVU2890 0.41 -0.5
2,988,370 - DVU2890 0.46 -0.6
2,988,385 - DVU2890 0.49 -0.5
2,988,391 - DVU2890 0.49 +0.5
2,988,396 - DVU2890 0.50 -0.2
2,988,396 - DVU2890 0.50 +1.0
2,988,443 + DVU2890 0.57 -1.1
2,988,451 - DVU2890 0.58 +0.0
2,988,480 + DVU2890 0.62 +0.5
2,988,586 + DVU2890 0.78 -0.8
2,988,702 - -0.6
2,988,715 + -0.0
2,988,846 + nikR DVU2891 0.22 -1.5
2,988,937 + nikR DVU2891 0.43 -0.5
2,988,949 + nikR DVU2891 0.46 -0.5
2,988,957 - nikR DVU2891 0.48 -0.5
2,988,968 - nikR DVU2891 0.51 -1.1
2,989,055 - nikR DVU2891 0.71 -2.0
2,989,104 + nikR DVU2891 0.83 -0.4
2,989,113 - nikR DVU2891 0.85 -0.5
2,989,140 - -0.8
2,989,162 + +0.5
2,989,162 + -0.4
2,990,002 - -0.6
2,990,060 - -0.1
2,990,104 + flgG DVU2893 0.20 -0.9

Or see this region's nucleotide sequence